Halosimplex litoreum: I7X12_06510
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Entry
I7X12_06510 CDS
T06959
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hlt
Halosimplex litoreum
Pathway
hlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I7X12_06510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlt03019
]
I7X12_06510
03016 Transfer RNA biogenesis [BR:
hlt03016
]
I7X12_06510
Enzymes [BR:
hlt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I7X12_06510
Messenger RNA biogenesis [BR:
hlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I7X12_06510
Transfer RNA biogenesis [BR:
hlt03016
]
Prokaryotic type
tRNA degradation factors
I7X12_06510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
EsxC
Motif
Other DBs
NCBI-ProteinID:
QPV64263
UniProt:
A0A7T3G0W0
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All DBs
Position
complement(1328540..1329853)
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AA seq
437 aa
AA seq
DB search
MTTEDEQAQAGTIEGQGPVEIDEEMARHLENKREELFEKFEIRDEFPAEVMREAEERTED
VQQEIRDEVDERRDLREMTTWTTDPIDAQDFDDAISVEKRDDEYVLWVHIADVSHYVDPD
TAMWEEAVERGNTVYLPDYTIHMLPPILAETVCSLVPNEDRLAHTVEMHLDPETLSYEEI
DIYKSVIESDARLTYSEAEEILDDPASADDLLEDTDVDLAEKTELVWELADRMHEQRKED
GSLVLNPARDRAHTIIEECMLKANKAVTHELMWDRGVEAMYRVHPQPSPQEWDEALQEIQ
DLDGVSIPGEAWDDPRKAVNATLEDAPGRQLNKIQRAVMFVMPRAKYMSDPFGGHHALNF
EIYGHFTSPIRRLSDLINHWIVHTNDVPEDLQALCKHASDQQKDAEQCEREYKQFLEEVG
LDAHAVNNRGIEVIESE
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgaggacgagcaggcccaggccggcacgatcgagggtcagggccccgtcgag
atcgacgaggagatggcccgccatctcgagaacaaacgcgaggaactgttcgagaagttc
gagatccgcgacgagttccccgccgaagtgatgcgagaagcggaagagcggaccgaggac
gtccagcaggagatccgcgacgaggtggacgaacgccgcgacctgcgcgagatgacgacc
tggacgaccgaccccatcgacgcccaggacttcgacgacgccatctccgtcgagaagcgc
gacgacgagtacgtcctctgggtccacatcgccgacgtgtcccactacgtcgaccccgac
accgcgatgtgggaagaggcggtcgaacggggcaacaccgtctatctccccgactacacc
atccacatgctgccgccgatcctcgccgagaccgtctgctccctggtccccaacgaggac
cggctggcccacaccgtcgagatgcacttggatccggagacgctctcctacgaggagatc
gacatctacaaatccgtcatcgagtccgacgcacggctcacctactccgaggccgaggag
attttagacgacccggcgagtgccgacgacctgctcgaagacaccgacgtcgacctggcc
gagaagaccgaactcgtctgggaactcgccgaccggatgcacgaacagcgcaaggaggac
ggctcgctcgtcctgaacccggctcgcgatcgggcccacaccatcatcgaggagtgcatg
ctcaaggccaacaaggccgtcacgcacgaactcatgtgggaccgcggcgtcgaggcgatg
taccgcgttcacccccagccctccccccaggagtgggacgaagcgctccaggagatccag
gatctggacggcgtctcgatccccggcgaagcgtgggacgacccccgaaaggccgtcaac
gcgacgctcgaagacgcgcccggccgccagctgaacaagatccagcgggccgtgatgttc
gtgatgccccgcgccaagtacatgagcgaccccttcggcggccaccacgcgctgaacttc
gagatctacggccacttcacctcgcccatccgtcggctgtcggacctcatcaaccactgg
atcgtccacaccaacgacgtgcccgaggacctccaggcgctgtgcaagcacgcctccgac
cagcagaaagacgccgagcagtgcgaacgcgagtacaagcagttcctcgaagaggtcggc
ctcgacgcccacgccgtcaacaaccgcgggatcgaagtgatcgagtccgagtag
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