Halosimplex litoreum: I7X12_16330
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Entry
I7X12_16330 CDS
T06959
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hlt
Halosimplex litoreum
Pathway
hlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I7X12_16330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlt03019
]
I7X12_16330
Messenger RNA biogenesis [BR:
hlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I7X12_16330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QPV62290
UniProt:
A0A7T3FX37
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All DBs
Position
3285494..3286840
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AA seq
448 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVVFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIVATPFTIELVKQQIKSEEK
FGVQNDLQKMEAGETMSIGDRNELEFVNVTHSIIDAINPVLHTPEGAIVYGLDKRMDHTP
VIGDPIDMKRFREIGREDNGVLCYIEDCTNANKKGRTPSESVARRHLKDVMYSLEDYDGG
IVATTFSSHIARVTSLVEFAEDIGRQPVLLGRSMEKYSGTAERLDFVDFPDDLGMYGHRK
SVDRTFKRIMNEGKENFLPIVTGHQGEPRAMLTRMGRGETPYEIDDGDKVIFSARVIPEP
TNEGQRYQSEKLLGMQGARIYDDIHVSGHLNKEGHYEMLDALQPQHVIPAHQDMSGFSDY
VNLAESEGYKMGRDLHVTRNGNLIQLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaactatcggcggctacgaggaagtcggccgccagatgacggca
gttcgcgcaggcgacgacgtcgtggtgttcgacatgggcctgaacctctcgaaggtcctc
atccacgacaacgtcgagaccgaacggatgcacagcctcgacctgatcgacatgggggcg
atccccgacgaccgcgtcatgtccgacctggaaggcgatgtgaaggccatcgtgccgaca
cacggccacctcgaccacatcggcgccatctccaagctggcccaccgctacgacgccccc
atcgtcgcgacgccctttacgatcgagctggtcaaacagcagatcaaaagcgaggagaag
ttcggcgtccagaacgacctgcagaagatggaagcgggcgagacgatgtccatcggggac
cgcaacgaactggagttcgtcaacgtcacccactccatcatcgacgccatcaacccggtc
ctgcacacgcccgagggcgccatcgtctacgggctggacaagcgcatggaccacacgccg
gtcatcggtgaccccatcgacatgaagcggttccgcgagatcggccgcgaagacaacggg
gtcctctgttacatcgaggactgtacgaacgccaacaagaaggggcgcacgccgtcggaa
tccgtcgcgcgacggcacctcaaagacgtgatgtactccctggaggactacgacggcggg
atcgtcgccaccaccttcagctcccacatcgcgcgggtcacgagcctcgttgagttcgcc
gaggacatcggccgacagccggtcctcctgggccgttcgatggagaagtactccggcacg
gccgagcgcctggacttcgtcgacttccccgacgacctggggatgtacggccaccgcaag
tccgtcgaccgcacgttcaagcggatcatgaacgagggcaaggagaacttcctgccgatc
gtgacgggccaccagggcgagccccgggcgatgctcacccgcatgggccgcggcgagacg
ccctacgagatcgacgacggcgacaaagtcatcttctcggcgcgggtcatccccgagccc
acgaacgagggccagcgctaccagtccgagaagctgctgggcatgcagggcgcgcgcatc
tacgacgacatccacgtctcgggccacctgaacaaggagggacactacgagatgctcgac
gcgctccagccccagcacgtcatccccgctcaccaggacatgtccggcttttcggactac
gtcaacctggccgagagcgaggggtacaagatgggtcgggacctgcacgtcacgcgcaac
ggcaacctgatccagctggtcgagtag
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