Halobacterium litoreum: LT972_02040
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Entry
LT972_02040 CDS
T07867
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlu
Halobacterium litoreum
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlu03016
]
LT972_02040
Enzymes [BR:
hlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LT972_02040
Transfer RNA biogenesis [BR:
hlu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LT972_02040
Prokaryotic type
tRNA splicing ligases
LT972_02040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UHH14844
LinkDB
All DBs
Position
complement(368949..370307)
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AA seq
452 aa
AA seq
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MRVPARVYASDALLDEMQSTGDLTLEQVRNVATLPGIRRFALVLPDGHQGYGFPIGGVAA
VGREDGVVSPGGIGFDINCGVRLLRTGLDREALRGREDELAESLSRRVPAGLGKGGYVDT
DRDDVLGILDDGLAWMRREGYATDHDLAHCEEGGRLDGDPGAVPPKAVDRGLNQVGSLGS
GNHFLEVQRVADVYDDATADAFGLREEQVCVLVHTGSRGLGHQTCTEYVRRFERAYPEAV
DALPDRQLVYAPLGDDLAERYLDAMRAAANFAWANRQGVTQAVRDAFTHDLGHGDVELVY
DVCHNVAKVEEHGGERVLVHRKGATRAFPPGHPEVPEAYRDVGQPVVIPGSMGTHSYVLA
GGERSMELTFGSTAHGAGRRLSRTQAKKDYPVGELRESLRERGVTVAARSEATLAEEAPG
AYKDVDEVVRVSDALGIGTTVARLEPLVTVKG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgccggcgcgcgtctacgccagcgacgccctgctggacgagatgcagtcgacc
ggcgacctcaccctcgaacaggtgcggaacgtcgcgacgctgccgggcatccggcggttc
gcgctcgtgttgccggacggccaccaggggtacgggttccccatcggcggcgtcgccgcg
gtcggccgggaggacggcgtggtgtcgccgggcggcatcgggttcgacatcaactgcggc
gtacgcctgctccgcaccggcctcgaccgcgaagccctccgcggccgcgaggacgaactc
gcggagtcgctgtcccgccgcgtgcccgctggactcgggaagggcggctacgtcgacacc
gaccgcgacgacgtgctcggcatcctcgacgacggcctcgcgtggatgcgccgcgagggg
tacgcgaccgaccacgacctcgcgcactgcgaggagggcggccgcctcgacggcgacccc
ggcgccgttccgccgaaggcagtcgaccgcggcctgaatcaggtggggtcgctcgggtcc
ggtaaccacttcctcgaagtccagcgcgtcgccgacgtctacgacgacgcgaccgcggac
gcgttcggcctgcgcgaggagcaggtctgcgtcctcgtccacacgggctctcgggggctc
ggccaccagacgtgtacggagtacgtgcggcgcttcgagcgcgcgtaccccgaggccgtc
gacgcgctccccgaccgacaactggtgtacgcgccgctcggggacgacctcgcggagcgc
tacctcgacgcgatgcgcgccgccgcgaacttcgcgtgggcgaaccgacagggcgtcacg
caggccgtacgggacgccttcacccacgacctcgggcacggcgacgtggaactggtgtac
gacgtctgccacaacgtcgcgaaggtcgaggaacacggcggcgagcgcgtgctcgtccac
cggaagggcgcgacgcgcgcgttcccgcccggacaccccgaagttccggaggcgtaccgg
gacgtgggccagccggtcgtcatcccggggagtatgggcacgcactcgtacgtgctcgcg
ggcggcgagcgctcgatggaactgacgttcgggtcgacggcgcacggggcgggccgccga
ctctcacggacgcaagcgaagaaggactacccggtgggggaactccgggagtcgctgcgg
gagcgcggcgtgacggtggcggcgcggtcggaagcgacgctcgcggaggaggcgccgggc
gcgtacaaggacgtggacgaggtggtgcgcgtctctgacgcgctcggcatcgggacgacg
gtggcgcgactcgaaccgctcgtgacggtgaaggggtga
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