Halobacterium litoreum: LT972_03195
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Entry
LT972_03195 CDS
T07867
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hlu
Halobacterium litoreum
Pathway
hlu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LT972_03195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlu03019
]
LT972_03195
03009 Ribosome biogenesis [BR:
hlu03009
]
LT972_03195
04131 Membrane trafficking [BR:
hlu04131
]
LT972_03195
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hlu04147
]
LT972_03195
Messenger RNA biogenesis [BR:
hlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LT972_03195
Ribosome biogenesis [BR:
hlu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LT972_03195
Membrane trafficking [BR:
hlu04131
]
SNARE
SNARE associated proteins
Others
LT972_03195
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LT972_03195
Exosome [BR:
hlu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LT972_03195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
Mg_chelatase
AAA_7
AAA_18
Sigma54_activat
ABC_tran
ATPase
AAA_17
AAA_3
DUF815
NB-ARC
AAA_24
Parvo_NS1
AAA_30
TsaE
PhoH
AAA_11
Vps4_C
SLFN-g3_helicase
KAP_NTPase
AAA_lid_PRS2_C
NACHT
IPT
Motif
Other DBs
NCBI-ProteinID:
UHH14013
LinkDB
All DBs
Position
complement(572082..574307)
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTIRIDGFTRQNADVGIGERVKIRKAEAEKADRLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVSRDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLVTEDTEVELREEPISGFE
RTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDESPAIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEV
GREEILKIHTRGMPLSDDVNLGSLADDTHGFVGADIESLTKEAAMRALRRYLPEIDLDEE
DIPPSLIDRMIVKRQDFKGALNEVEPSAMREVLVELPKITWDDVGGLTDAKDNVKESVEW
PLNEPEKFGRMGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTVIFFDELDSLAPGRGQEVGNNVSERVVNQLLTELDGLEEMEDV
MVIGATNRPDIIDPALIRSGRFDRLVMVGQPDVEGREQILKIHSGDIPLAPDVSLRELAE
ITDGYVGSDLANIAREGAIEALREDDDADVVEMRHFRKALENVRPTITDDLMDYYDQVEE
QFKGSQAPDSGRRGGEHIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttcaacttgaggtcgcgaaagcctacccgaacgactcgggccgaggcatc
gcgcgcctcgaccccgacaccctgttgcacctgaagctcagtccgggtgacatcatcgaa
atcgagggggccgaaaccacggcggccaaagtgtggcgcgccgaccggcaggactggaac
acggacaccatccgcatcgacggattcacgcgccagaacgccgacgtcggcatcggcgaa
cgcgtgaagattcggaaggcggaggccgagaaggccgaccgcctcgtcctcgcacccccc
gaggaggccagcgtccagttcggctcggacgcggccggcatggtgaaacgccagattctg
aagcgcccggtcgtctcgcgggacatcgtgcccgtcatgtcgagcacgaaccacccgttc
atgcgctcgcccgggcaggccatcccgctcatcgccgtcgagacggagccggagggcgtc
tgtctggtcaccgaggacaccgaagtcgagttgcgcgaggagccgattagcggcttcgag
cgcaccggcggcggcatcacctacgaggacatcggcggcttagagaacgagattcagcgc
gtccgggagatggtcgaactcccgatgaaacacccccagatcttccagaagctcggcatc
gagccgccacagggggtgttgctccacgggccgcccggcaccgggaagacgctgctcgcg
aaagccgtcgccaacgagacctccgcgtcgttcttctcgattgcgggcccggaaatcatc
tcgaagtactacggcgagtccgaacagcaactccgcgaaatcttcgaggacgcgaaagac
gagtcgccggccatcatcttcatcgacgaactcgactccatcgcgcccaagcgcgaggac
gtcaccggcgaggtcgagcgccgcgtcgtcgcgcaactcctgacgatgatggacggcctc
gagggccgcggccaggtcatcgtcatcgcggcgacgaaccgcgtggacgccgtcgacccc
gcgctccggcgtccgggccgcttcgaccgcgaaatcgaaatcggcgtccccgacgaggtc
ggccgcgaggagattctgaagattcacacccgcggcatgcccctctcggacgacgtgaac
ctcgggtcgctcgccgacgacacccacggcttcgtcggcgccgacatcgagagcctgacg
aaggaggctgcgatgcgcgcgctccggcgctacctccccgagatagatttagacgaggag
gacatcccgccgagcctcatcgaccgcatgatcgtcaagcgccaggacttcaagggcgcg
ctcaacgaggtcgaaccctccgcgatgcgggaggtcctcgtcgaactcccgaagattacg
tgggacgacgtcggcggcctcacggacgcgaaggacaacgtcaaggagtccgtcgagtgg
ccgctgaacgaacccgagaagttcgggcgcatgggcatcgacccgccggccggcgtcctg
ctgtacgggccgccgggcaccgggaagacgctgatggcgaaagccgtcgccaacgagacg
aacgcgaacttcatctcggtccgcggcccccaactcctctcgaagtgggtcggcgagtcg
gagaaggccatccgacagaccttccggaaggcccggcaggtctccccgacggtcatcttc
ttcgacgaactcgacagcctcgcgcccggccgcggacaggaagtcgggaacaacgtcagc
gagcgcgtcgtcaaccaactcctcaccgaactggacggcctcgaggagatggaggacgtg
atggtcatcggcgccaccaaccgcccggacatcatcgaccccgcgctcatccggagcggg
cggttcgaccgcctcgtcatggtcggccagccggacgtcgaaggccgcgagcagattctg
aagattcactccggagacatccccctcgcgcccgacgtctccctccgcgaactcgcggaa
atcacggacggctacgtgggtagtgacctcgcgaacatcgcccgcgagggcgccatcgag
gcgctccgcgaggacgacgacgccgacgtcgtcgagatgcgccacttccggaaggccctg
gagaacgtccgccccaccatcacggacgacctcatggactactacgaccaagtcgaagag
cagttcaagggcagccaagcacccgacagcggccgccgcggcggcgaacacatcggattc
cagtag
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integrated database retrieval system
