Halobacterium litoreum: LT972_03925
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Entry
LT972_03925 CDS
T07867
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hlu
Halobacterium litoreum
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hlu03016
]
LT972_03925
Enzymes [BR:
hlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LT972_03925
Transfer RNA biogenesis [BR:
hlu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LT972_03925
Prokaryotic type
tRNA splicing ligases
LT972_03925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF1663
Motif
Other DBs
NCBI-ProteinID:
UHH14153
LinkDB
All DBs
Position
complement(708267..709766)
Genome browser
AA seq
499 aa
AA seq
DB search
MTTFDADGLTLHEVEANVWELERDDGMDVPARVFANEDLLEHIKDDRTLSQLRNVACMPG
AVAPALCMPDGHQGYGFPVGGVAAFDAEDGCISPGGVGFDINCGVRMVKTNLTYEDVRGR
EEELVEALFDAVPCGLGGGGVHDGNHTDLEKALERGVDWCLEEGYAVREDLEHCEDEGMR
PDADPDAVSKKAKDRGASQMGSLGSGNHFLEIQRVTDVYDDETADAFGLAEDQLVVLIHC
GSRGLGHQVCSDYLRRIEQEHPEFLEELPDKDLAAAPAGSEVAEDYYGAMCAAINFAWVN
RQLITHAVRETFADVFDASWQDLEMDLLYDVAHNIAKRETHDVYVTEDGYSLDGDGGRVE
RDLYVHRKGATRAFPAGHPEVPKAYRDVGQPVIIPGSMGAGSYVLKGGDGSLDRSFGSTA
HGAGRLMSRTQAKDEYWGGDVADDLREQNEIYVKAASGSTIAEEAPGVYKDVDEVVGVSD
DLGIGDLVVRTFPVCNVKG
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgttcgacgccgacggcctcacgctccacgaggtcgaggcgaacgtctgggag
ttggagcgcgacgacgggatggacgtcccggcgcgcgtgttcgcgaacgaggacctcctc
gaacacatcaaggacgaccgcacgctctcgcaactccggaacgtcgcgtgcatgccgggc
gccgtcgcgcccgcgctctgcatgcccgacggccaccaggggtacggtttcccggtgggc
ggcgtcgcggcgttcgacgccgaggacggctgtatctcgccgggcggcgtcggcttcgac
atcaactgcggcgtccggatggtgaagacgaatctgacctacgaggacgtgcggggccgc
gaggaggaactcgtggaggcgctgttcgacgccgtgccctgcggtctcggcggcggcggc
gtccacgacggcaaccacaccgacttggagaaggcgctggaacgcggcgtcgactggtgt
ctggaggaggggtacgcggtgcgcgaggacctcgagcactgcgaggacgaggggatgcgt
ccggacgccgacccggacgccgtctcgaagaaggccaaggaccgcggcgccagccagatg
gggtcgctggggtcgggcaaccacttcctcgaaatccagcgcgtcaccgacgtctacgac
gacgagacggccgacgcgttcggtctcgctgaggaccaactcgtcgtcctgattcactgc
ggctcgcggggcctcggccaccaggtctgctcggactacctccggcgcatcgagcaggaa
caccccgagttcctcgaggaactcccggacaaggacctcgccgctgcgcccgccggctcc
gaggtcgccgaggactactacggcgcgatgtgcgccgccatcaacttcgcgtgggtgaac
cgccaactcatcacgcacgcggtccgggagacgttcgcggacgtgttcgacgcgtcgtgg
caggacttggagatggacctgctgtacgacgtggcgcacaacatcgcgaaacgcgagact
cacgatgtgtacgtcactgaagacggctacagcctcgacggcgacggcgggcgagtggag
cgcgacctctacgttcaccgcaagggcgcgacgcgcgcgttccccgccggccaccccgag
gtcccgaaggcgtaccgcgacgtgggtcagccggtcatcatccccggcagcatgggagcc
gggagttacgtcttgaagggcggcgacggctcgctcgaccgctcgttcggttccactgcg
cacggcgcgggccggctgatgagtcgcacgcaggcgaaagacgagtactggggcggcgac
gtggccgacgacctgcgcgagcagaacgaaatctacgtcaaggcggcctcaggctccacc
atcgcggaggaggcccccggcgtctacaaggacgtggacgaggtcgtcggcgtctccgac
gacctcggcatcggcgacctcgtggtgcgcacgttccccgtctgcaacgtcaaggggtag
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