Halobacterium litoreum: LT972_03960
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Entry
LT972_03960 CDS
T07867
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hlu
Halobacterium litoreum
Pathway
hlu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
LT972_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlu03019
]
LT972_03960
03009 Ribosome biogenesis [BR:
hlu03009
]
LT972_03960
04131 Membrane trafficking [BR:
hlu04131
]
LT972_03960
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hlu04147
]
LT972_03960
Messenger RNA biogenesis [BR:
hlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
LT972_03960
Ribosome biogenesis [BR:
hlu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
LT972_03960
Membrane trafficking [BR:
hlu04131
]
SNARE
SNARE associated proteins
Others
LT972_03960
Autophagy
Aggrephagy
Other aggrephagy associated proteins
LT972_03960
Exosome [BR:
hlu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
LT972_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
TIP49
AAA_22
AAA_33
AAA_14
NPHP3_N
nSTAND3
AAA_28
AAA_7
RNA_helicase
IstB_IS21
DUF815
Mg_chelatase
AAA_lid_PRS2_C
AAA_3
AAA_17
ABC_tran
AAA_18
TsaE
SLFN-g3_helicase
Sigma54_activat
NB-ARC
Parvo_NS1
AAA_11
NACHT
AAA_24
AAA_30
AAA_19
PhoH
ATPase
bpMoxR
Zeta_toxin
NTPase_1
Bac_DnaA
ATP-synt_ab
Histidinol_dh
Zot
Motif
Other DBs
NCBI-ProteinID:
UHH14160
LinkDB
All DBs
Position
complement(714377..716656)
Genome browser
AA seq
759 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRASMEELGLENGDYVVVEGKGDQGRAVARVWPGYPEDEG
EGIVRIDGRLRQEADVGIDDKVTVEPADIKPATTVTVALPQNLRVRGDITPMVRDRLNGR
PVTAGQTIPISFGFGGMSTVSGQQIPVKIAETEPEGTVVVSNDTDIQVSERPAEEIAPGA
GAGGEGGDGTPNVAYEDIGGLDRELEQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPG
TGKTLIAKAVANEIDANFQTISGPEIMSKYYGESEEQLREVFDEAEENAPAIVFIDELDS
IAPKRGETQGDVERRVVAQLLSLMDGLEERGDVTVIAATNRVDAIDPALRRGGRFDREIE
IGVPDQDGRKEILQVHTRGMPLADEVDLDSFAENTHGFVGADIESLAKEAAMNALRRVRP
EIDLEADEIDAELLESIRVTERDFKEALKGIEPSALREVFVEVPDTTWDQVGGLEDTKER
LRETIQWPLDYPEVFESMDLQSAKGVLLYGPPGTGKTLLAKAVANEANSNFISVKGPELL
NKYVGESEKGVREVFEKARANAPTVVFFDEIDSIAGERGRGMSDSGVGERVVSQLLTELD
GIEELEDVVVVATTNRPDLIDNALLRPGRLDRHVHVPVPDEAARRAILDVHTRSKPLADD
VDLDDIAARTDGFVGADVEALVREATMNATREFINSVDPEEATESVGNVRVTMAHFEDAL
DEVTPSVDEQVREEYEQIEERFEKAEAPEEEDRTPGAFQ
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcacggtcaagccgctcaagcagaaggacgccggccgcggattggccgccgtg
gaccgcgcgtccatggaagaactcggcctcgagaacggcgactacgtcgtcgtcgaaggg
aaaggcgaccagggacgagccgtcgcgcgcgtctggccgggctaccccgaggacgagggc
gagggcatcgtccgcatcgacgggcgcctccggcaggaggccgacgtcggcatcgacgac
aaggtgaccgtcgaacccgcggacatcaagcccgcgaccacggtcaccgtcgcgctcccg
cagaacctccgcgtgcgcggcgacatcacgccgatggtccgggaccgcctcaacggccgc
cccgtcaccgccggccagaccatccccatctccttcggcttcggcgggatgagcacggtc
tccggccagcagattcccgtgaaaatcgcggagacggagcccgagggcacggtcgtcgtg
agcaacgacaccgacatccaggtctccgagcgccccgccgaggaaatcgcgcccggcgcg
ggcgcgggcggcgagggcggcgacggcacgccgaacgtcgcctacgaggacatcggcggc
ctcgaccgcgaactcgaacaggtccgtgagatgatcgaactcccgatgcgtcaccccgag
ttgttccagcaactcggcatcgaaccgccgaagggcgtgctcctgcacggcccgcccggc
accgggaagacgctcatcgcgaaggccgtcgccaacgagatcgacgcgaacttccagacc
atctcgggccccgaaatcatgtccaagtactacggggagtccgaggagcaactccgcgag
gtcttcgacgaggccgaggagaacgcgcccgccatcgtcttcatcgacgaactcgactcc
atcgcgcccaagcgcggcgagacccagggcgacgtggagcgccgcgtcgtcgcgcaactg
ctcagcctcatggacggcctcgaagagcgcggcgacgtgacggtcatcgccgccaccaac
cgcgtggacgcaatcgaccccgcgctccgccgtggcggccggttcgaccgcgagatcgaa
atcggcgtccccgaccaggacggccgcaaggagattctccaagtccacacgcgcgggatg
cccctcgccgacgaggtggacctcgactcgttcgcggagaacacccacggcttcgtcggc
gccgacatcgagagcctcgcgaaggaagccgcgatgaacgcgctccggcgcgtccgcccc
gaaatcgacctcgaagccgacgaaatcgacgccgaactcctcgaatccatccgcgtcacg
gaacgcgacttcaaggaggcgctgaagggcatcgagccgtcggcgctccgcgaggtgttc
gtggaagtccccgacaccacgtgggaccaggtcggcggcctcgaagacaccaaagagcgc
ctccgcgagaccatccagtggcccctcgactaccccgaggtgttcgagtcgatggacctc
cagtccgcgaagggcgtgctcctctacggcccgccgggcaccgggaagacgctgctcgcg
aaggccgtcgccaacgaggccaactccaacttcatctcggtgaagggccccgaactcctc
aacaagtacgtcggggagtccgagaagggcgtccgcgaggtgttcgagaaggcgcgcgcg
aacgccccgacggtggtgttcttcgacgaaatcgactccatcgcgggcgaacgcggccgc
ggcatgagcgactccggcgtcggcgaacgcgtcgtcagccaactgctcaccgaactcgac
ggcatcgaggaactggaggacgtcgtggtcgtcgccaccacgaaccgcccggacctcatc
gacaacgcgctcctgcgcccgggccgcctcgaccggcacgtccacgtccccgtccccgac
gaggccgcgcgccgcgccatcctcgacgtccacacccgcagcaaaccgctcgccgacgac
gtcgacctcgacgacatcgccgcgcgcaccgacggcttcgtcggcgcggacgtcgaagcg
ctcgtgcgcgaagccacgatgaacgccacccgcgagttcatcaactccgtcgaccccgag
gaagccacggaatccgtcgggaacgtccgcgtcaccatggcgcacttcgaggacgccctc
gacgaagtcaccccgagcgtcgacgaacaggtccgcgaagagtacgagcaaatcgaagaa
cgcttcgagaaagccgaagcccccgaggaagaggaccgcacccccggggcgttccaatag
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