Halobacterium litoreum: LT972_04620
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Entry
LT972_04620 CDS
T07867
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hlu
Halobacterium litoreum
Pathway
hlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT972_04620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hlu03019
]
LT972_04620
Messenger RNA biogenesis [BR:
hlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LT972_04620
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
PAS_4
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UHH14850
LinkDB
All DBs
Position
complement(832288..833634)
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AA seq
448 aa
AA seq
DB search
MEIEIATIGGYEEVGRQMTAVRAGDDIVIFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGALSKLAHRYDAPIVASPFTIELVKGQIEGEQK
FGVDNELVKMKAGGTMPIGERCELEFVHVTHSIIDAINPVLHTPEGAVVYGLDKRMDHDP
VLEDPIDMKRFREIGREDEGVLCYIEDCTNAGRKGRTASESVARRELKDTLQSVEDYDGG
IVATTFSSHVSRVSSLVEFAKDIGREPILLGRSMERYSGTAERMGRVNFPDDLGMFGHRK
SVDRAFKRVMNEGKENFLPIVTGHQGEPRAMLTRMGRGETPYDIEDGDKVIFSARVIPEP
TNEGQRYQSERLLQMQGARIYDDIHVSGHLREEGHYQMLQALQPQHVIPAHQDMKGFAPY
ADLCKSQGYKLGRDLHVTENGNTIQLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgagattgcaaccatcggcggttacgaggaagtcggtcggcagatgactgcc
gtccgagcaggcgacgacatcgtgattttcgacatgggcctcaacctctcgcaggtcctc
atccacgacaacgtcgagaccgagaagatgcacagcctcgacctcatcgacatgggcgcc
atcccggacgaccgcgtcatgtccgacctcgagggcgacgtgcaggccatcgtcccgacc
cacggccacctcgaccacatcggcgcgctctcgaagctcgcccaccggtacgacgcgccc
atcgtcgcgtccccgttcaccatcgaactggtgaagggccaaatcgagggcgagcagaag
ttcggcgtcgacaacgaactcgtgaagatgaaggccggcggcacgatgcccatcggcgag
cgctgcgaactggagttcgtccacgtcacgcactccatcatcgacgccatcaaccccgtc
ctccacacgcccgagggcgccgtcgtctacggcctcgacaagcgcatggaccacgacccc
gtcctcgaagaccccatcgacatgaagcgcttccgcgaaatcgggcgtgaggacgagggc
gtcctctgttacatcgaggactgtacgaacgcgggccggaagggccggacggcgtccgag
agcgtcgcgcgccgcgaactcaaggacacgctccagtccgtcgaggactacgacggcggc
atcgtcgcgacgacgttctccagtcacgtctcccgcgtctcctcgctcgtggagttcgcg
aaggacatcggccgcgaaccgattctgctcgggcgctcgatggagcgctactccggcacc
gccgagcgcatgggtcgcgtgaacttccccgacgacctcgggatgttcggccaccggaag
tccgtcgaccgcgcgttcaagcgcgtcatgaacgagggcaaggagaacttcctccccatc
gtcaccggccatcagggcgaaccgcgcgcgatgctcacccggatgggccgcggcgagacc
ccctacgacatcgaggacggcgacaaggtcatcttctcggcgcgcgtcatcccggagccg
accaacgagggccagcgctaccagagcgagcgcctgctccagatgcagggcgcccgcatc
tacgacgacatccacgtctccggccacctgcgcgaggagggccactaccagatgctgcag
gcgctccagccccagcacgtcatccccgcccaccaggacatgaagggcttcgcgccgtac
gccgacctctgtaagagccagggctacaaactcggccgcgacctgcacgtcacggagaac
ggcaacaccatccaactcgtcgagtaa
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