Halobacterium litoreum: LT972_04900
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Entry
LT972_04900 CDS
T07867
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hlu
Halobacterium litoreum
Pathway
hlu03022
Basal transcription factors
hlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LT972_04900
09124 Replication and repair
03420 Nucleotide excision repair
LT972_04900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hlu03021
]
LT972_04900
03400 DNA repair and recombination proteins [BR:
hlu03400
]
LT972_04900
Enzymes [BR:
hlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT972_04900
Transcription machinery [BR:
hlu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LT972_04900
DNA repair and recombination proteins [BR:
hlu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LT972_04900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
ERCC3_RAD25_C
Helicase_C
SNF2-rel_dom
DEAD
AAA_22
AAA_30
AAA
SWI2_SNF2
AAA_33
AAA_25
AAA_5
SLFN-g3_helicase
AAA_11
TMP_2
TrmB
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UHH14338
LinkDB
All DBs
Position
complement(885747..887546)
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AA seq
599 aa
AA seq
DB search
MTDISQEAFHDALEDVGRPVATAEQVARVLGCTQAEAADALAALADDGAVARADVDNDPV
VWYPRDWLELTDRERVVPFPGRREVVVDQPEQFTRAQLSRFAHLEDTTRTGSYRYVIREE
DVWAAPFDALEDLLAAMRRVLPRECPGLEDWVEEQWTRATRFRLRTHDDGYVVLEAKSES
LLGNVAEQKLAEDVLRAPISDTEAWVAEEKVAELKRTLYEAGYPVQDDRDLDTGEPLDVD
LDLDLREYQQDWVERFVDASSGVLVGPPGSGKTVAAMGVLEAVGGETLVLVPSRELAAQW
RDELLAHTSLTREQIGEYHGGTKEVRPVTIATYQTAGMDRHRHVFDDRKWGLIVYDEAHH
IPSEVFRRSADLQSKHRLGLTATPVREDDKEMDIYTLVGRPIGTDWDALFDAGYVAEPEV
EIRYVPWTDDDARHEYAAESGHTRRRLAAENPAKDAEAEHLLGQYPDKQALVFVDYLEQG
ERLAERLDAPFVNGETRHARREALFDQFRTGALDALVVSRIGDEGIDLPDAELAVVASGL
GGSRRQGAQRAGRTMRPGGQSLLFVLATRGTEEEDDARSRMRHLSAKGVRVTESGSDRV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacatctcccaggaggcgttccacgacgcgctcgaagacgtggggcgtcccgtc
gcgacggccgaacaggtcgcccgcgtgctcggctgtacgcaggccgaagccgcggacgcg
ctcgcggcgctcgccgacgacggcgccgtggcgcgcgcggacgtggacaacgacccggtg
gtgtggtatccgcgggactggctggagctcaccgaccgcgagcgcgtcgtgccgttcccg
ggtcgccgcgaagtcgtcgtcgaccagcccgagcagttcacgcgagcgcaactctcgcgg
ttcgcgcacctcgaggacaccacgcggaccgggagttaccggtacgtgattcgcgaggag
gacgtgtgggcggcgccgttcgacgcgctggaggacctgctcgcggcgatgcggcgcgta
ctcccgcgggagtgtcccggcctcgaagactgggtcgaggagcagtggacgcgcgcgacc
cggttccggctgcgcacgcacgacgacggctacgtcgtcctcgaagccaaatcggagagc
ctgctcgggaacgtcgccgagcagaaactcgccgaggacgttctccgcgcgcccatctcg
gacacggaagcgtgggtcgccgaggagaaagtggcggaactcaagcgcacgctgtacgag
gcgggctacccggtgcaggacgaccgcgacctcgacacgggcgaaccgctcgacgtggac
ctcgacctcgacttgcgcgagtaccagcaagactgggtcgagcggttcgtggacgcgagt
tcgggcgtgctcgtcgggccgccgggctccggaaagacggtggcggcgatgggcgtcctc
gaagccgtcggcggcgagacgctggtgttggtgcccagcagggaactcgcggcgcagtgg
cgcgacgaactgctcgcgcacacgtcgctgacccgcgagcaaatcggcgagtaccacggc
ggcacgaaggaggtgcgtccggtcaccatcgcgacctaccagaccgccgggatggaccgc
caccggcacgtcttcgacgaccgcaagtgggggctcatcgtctacgacgaggcgcatcac
atcccatcggaggtgttccggcgctcggcggacctccagagcaaacaccgcctcgggctg
acggcgacgccggtccgcgaggacgacaaggagatggacatctacacgctcgtcgggcgg
cccatcgggacggactgggacgcgctgttcgacgcgggctacgtcgccgaacccgaagta
gagattcggtacgtgccgtggacggacgacgacgcgcgccacgagtacgccgccgagagc
gggcacacgcgtcgccgcctcgccgcggagaacccggcgaaggacgcggaggccgaacac
ctcctcggccagtatccggacaagcaggcgctcgtgttcgtggactacctcgaacagggc
gagcgcctcgccgagcgcctggacgcgccgttcgtgaacggggagacgcggcacgcgcgc
cgggaggcgctgttcgaccagttccggacgggcgcgctggacgcgctcgtggtctcccgc
atcggcgacgagggcatcgacctgccggacgccgaactcgcagtcgtcgcgtcgggactc
ggcgggagtcggcgacagggcgcccagcgcgccgggcggacgatgcgaccgggcggccag
tcgctgttgttcgtgctggcgacgcgtggcaccgaggaggaagacgacgcgcgcagtcgg
atgcgccacctgtcggcgaagggcgtgcgcgtcaccgagtcggggagcgaccgtgtctga
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