Halobacterium litoreum: LT972_12290
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Entry
LT972_12290 CDS
T07867
Name
(GenBank) single-stranded DNA binding protein
KO
K07466
replication factor A1
Organism
hlu
Halobacterium litoreum
Pathway
hlu03030
DNA replication
hlu03420
Nucleotide excision repair
hlu03430
Mismatch repair
hlu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LT972_12290
03420 Nucleotide excision repair
LT972_12290
03430 Mismatch repair
LT972_12290
03440 Homologous recombination
LT972_12290
03460 Fanconi anemia pathway
LT972_12290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hlu03000
]
LT972_12290
03032 DNA replication proteins [BR:
hlu03032
]
LT972_12290
03400 DNA repair and recombination proteins [BR:
hlu03400
]
LT972_12290
Transcription factors [BR:
hlu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
LT972_12290
DNA replication proteins [BR:
hlu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
LT972_12290
DNA repair and recombination proteins [BR:
hlu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
LT972_12290
MMR (mismatch excision repair)
LT972_12290
DSBR (double strand breaks repair)
HR (homologous recombination)
LT972_12290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
OB_Ssb-like
OB_MEIOB_N
SSB
HROB
DUF4131
POT1PC
Motif
Other DBs
NCBI-ProteinID:
UHH12932
LinkDB
All DBs
Position
complement(2243881..2245284)
Genome browser
AA seq
467 aa
AA seq
DB search
MGDIEDTYEDLDTDVSLEEFREAVESKVEQMGGLADEETAAMLIAHELDDGEVNGVADIE
PEMDEAKFLAKVTSVGEVRTFERDDDEDPEGRVVNVEVADESGSVRVSLWDEQAEAASEE
LSVGEVLRIKGRPKDGYNGVEVSADQIEVDDEEEIDVAVQDEYRVEDLSLGVSDVNLVGE
VLAAESVRTFDRDDGSEGKVSNLVLGDETGRVRVTLWDERADRATELEPGVVVEVVDGYV
RERDGSLELHVGDRGAVEEVEDDVAYVPDSTPIDTLEMDDTADIAGVIRSADPKRTFDRD
DGSEGQVRNVRVQDDSGDIRVALWGDKADLDIGPGDEVAFVDVEIQDGWQDDLEASAGWQ
ASVVELPDGAATGDEADDTGSAQGLAAFEDEGDESASADAEDTSSDASADGEEVEFTGVV
VQAQNPVILDDGEETMSVETDADVTLGQELTVRGSLRDGRLNAEELR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacatcgaggacacttacgaggacctcgacaccgacgtgtccctggaggagttc
cgggaggccgtcgagtcgaaggtcgagcagatgggcgggctggccgacgaggagacggcc
gccatgctcatcgcccacgaactcgacgacggcgaggtcaacggggtcgccgacatcgaa
ccggagatggacgaggcgaagttcctcgcgaaggtgacgagcgtcggcgaggtgcggacg
ttcgagcgcgacgacgacgaggacccggagggccgcgtggtgaacgtcgaggtcgccgac
gagtcggggagcgtgcgagtctcgctgtgggacgagcaggccgaggccgccagcgaggaa
ctctccgtcggtgaagtgctccgcatcaagggtcggccgaaggacggctacaacggcgtg
gaggtgagcgccgaccagattgaggtcgacgacgaggaggagatagacgtcgcggtgcag
gacgagtaccgcgtcgaggacctctcgctgggcgtctcggacgtgaacctcgtcggcgag
gtgctggccgccgagtccgtgcggacgttcgaccgagacgacggcagcgaggggaaggtg
tcgaatctcgtgctcggcgacgagacgggtcgcgtccgggtgacgctctgggacgagcgc
gccgaccgcgcgaccgaactcgaacctggcgtcgtcgtcgaagtggtggacggctacgtc
cgggagcgagacggcagtctggaactccacgtcggcgaccgcggcgccgtcgaggaagtt
gaggacgacgtggcgtacgtgcctgactcgacgcccatcgacaccctcgaaatggacgac
acggcggacatcgcgggcgtgattcgctccgccgacccgaagcgcacgttcgaccgcgac
gacggcagcgagggccaagtgcggaatgtgcgcgtgcaggacgactcgggcgacatccgc
gtcgcgctctggggggacaaggccgatctcgacatcgggccgggcgacgaggtggcgttc
gtggacgtggagattcaggacggctggcaggacgacctcgaagcctctgcgggctggcag
gcctccgtcgtggaacttccggacggcgccgcgaccggcgacgaagcagacgacaccggg
agcgctcagggcctcgccgccttcgaggacgagggcgacgagagcgcgagcgcggacgcc
gaggacaccagtagtgatgcgagcgccgacggcgaggaagtggagttcacgggcgtcgtc
gtgcaggcccagaaccccgtcatcctcgacgacggcgaggagacgatgagcgtcgagacg
gacgccgacgtgacgctcggtcaggaactcacggttcgggggtcgctacgcgacgggcgc
ctgaacgccgaagaactgcgctag
DBGET
integrated database retrieval system
