Haloarcula marismortui ATCC 43049: rrnAC1527
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Entry
rrnAC1527 CDS
T00211
Symbol
cdc48d
Name
(GenBank) cell division control protein 48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hma
Haloarcula marismortui ATCC 43049
Pathway
hma04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
rrnAC1527 (cdc48d)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hma03019
]
rrnAC1527 (cdc48d)
03009 Ribosome biogenesis [BR:
hma03009
]
rrnAC1527 (cdc48d)
04131 Membrane trafficking [BR:
hma04131
]
rrnAC1527 (cdc48d)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hma04147
]
rrnAC1527 (cdc48d)
Messenger RNA biogenesis [BR:
hma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
rrnAC1527 (cdc48d)
Ribosome biogenesis [BR:
hma03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
rrnAC1527 (cdc48d)
Membrane trafficking [BR:
hma04131
]
SNARE
SNARE associated proteins
Others
rrnAC1527 (cdc48d)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
rrnAC1527 (cdc48d)
Exosome [BR:
hma04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
rrnAC1527 (cdc48d)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
CDC48_2
AAA_16
RuvB_N
AAA_5
AAA_22
TIP49
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
IstB_IS21
Mg_chelatase
AAA_7
ABC_tran
AAA_18
AAA_3
Sigma54_activat
AAA_17
Parvo_NS1
NB-ARC
AAA_24
DUF815
AAA_11
TsaE
ATPase
AAA_30
PhoH
SLFN-g3_helicase
AAA_lid_PRS2_C
NACHT
Vps4_C
IPT
DUF3306
Motif
Other DBs
NCBI-ProteinID:
AAV46447
UniProt:
Q5V205
LinkDB
All DBs
Position
I:complement(1360130..1362355)
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGSDTTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEAEKADKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVCLITEDTEVELREEPISGFE
KTGGGITYEDIGGLQNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDASEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDEV
GREEILQIHTRGMPLSDDVNLAKLATDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIIKRDDFKGALNEVSPSAMREVLVELPKMSWDNVGGLSGPKEQVQEAVEW
PMNSPEKFERMGVTPPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTIIFFDELDSLAPGRGGEMGSNVSERVVNQLLTELDGLEEMEDV
MVIGATNRPDMIDPALIRSGRFDRLVMIGEPDIEGREQILKIHTDDTPLSPDVSLRELAE
VSDGFVGSDLESIAREAAIEALREDDNAEEVEMRHFRQAMDSVRPTITDDIREYYEQMEE
EFRGGSSPQRQAGTGGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttcaattggaagtggcgaaggcgtacccgaacgactcgggacgcggtatc
gccagactcgaccccgatacgttgttgcatctcaagctctcccccggagacatcatcgag
atagaggggagcgacacgaccgcggccaaggtgtggcgggccgaccggcaggactggaac
actgacactgttcgcatcgacggcttcacgcgccagaacgctgacgtgggtattggtgag
cgcgtcacaatccggaaggccgaggccgagaaggccgacaagctcgtcctcgcgccgccc
gaggaagcgtcggtccagttcggctccgacgccgctggcatggttaagcggcagatattg
aaacggccggtcgtcgagcgcgacatcgtcccggtgatgtcctcgacgaaccacccgttc
atgcgctcgcccggacaggccatcccgctcatcgccgtcgagaccgagcccgagggcgtc
tgtctcatcaccgaagacaccgaggtggaactccgcgaggaaccgatctccggcttcgag
aagaccggcggcggcatcacctacgaggacatcggcgggctgcaaaacgagatccagcgg
gtgcgagagatggtcgagttgccgatgaaacacccccagatcttcaagaagctcggcatc
gagccgccacagggggttctgctccacggcccgcccggcaccgggaagacgctgcttgcg
aaggctgtcgccaacgagacctccgctagcttcttctctattgccggccccgagatcatc
tcgaagtactacggcgagtccgaacagcagttacgcgagatattcgaggacgcaagcgag
gaatcgccctcgatcatcttcatcgacgagctggactccatcgcgcccaagcgcgaggac
gtaaccggcgaggtcgagcgccgtgtcgtcgcccagctgctgacgatgatggacggcctc
gaatcgcgagggcaggtcatcgtcatcgccgcgacgaaccgcgtcgacagcgtcgacccc
gcgctccgtcgcccgggccgcttcgaccgcgagatcgagatcggcgtgccggacgaggtc
ggtcgcgaggaaatcctccagatccacacccgcggcatgccgctgtccgacgacgtaaat
ctcgccaagttggcgactgacacgcacggcttcgtcggagccgacatcgagagtctcacg
aaggaggccgcgatgaaggcgctccggcgctaccttcccgagatcgatctggacgaggag
gacatcccgccgagcctcatcgaccggatgataatcaagcgcgacgacttcaaaggggcg
ctcaacgaggtgagtccatcggcgatgcgggaggtgctggtcgaactcccgaagatgtcc
tgggacaacgttggcgggctcagtgggcctaaagagcaggttcaggaggccgtcgagtgg
ccgatgaactccccggagaagttcgagcgcatgggcgtgacaccgccgtcgggggtgttg
ctgtacggcccacccggcaccgggaagacgctcatggcgaaagccgtcgccaacgagacg
gacgcaaacttcatctcggtccgtggcccgcaactgctctcgaagtgggtcggcgagagc
gagaaggccatccgccagacgttccggaaggcccgccaggtcgccccgaccatcatcttc
ttcgacgaactcgactcgttggcaccgggtcggggcggcgagatggggtcgaacgtctcc
gagcgcgtcgtcaatcagctcctgaccgaacttgacgggcttgaagagatggaggacgtg
atggtcattggcgcgaccaaccggccggacatgatcgacccggcgctaatccgttcgggc
cggttcgaccggctcgtgatgatcggcgagcccgacatcgagggccgtgagcagatcctg
aagatccacacggacgacacgccgctgtcgcccgacgtgagcctgcgcgaactggccgaa
gtcagcgatgggttcgtcggctcggacctcgaatctatcgcccgggaggctgccatcgag
gcactccgtgaggacgacaacgcggaggaagtcgagatgcgtcacttccggcaggcgatg
gacagcgtgcgcccgacgattaccgacgacatccgcgagtactacgagcagatggaagag
gagttcagaggcggttccagcccgcagcgccaggccggaaccggcggccggatcggcttc
cagtaa
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