Haloarcula marismortui ATCC 43049: rrnAC2267
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Entry
rrnAC2267 CDS
T00211
Symbol
uvrD
Name
(GenBank) repair helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hma
Haloarcula marismortui ATCC 43049
Pathway
hma03420
Nucleotide excision repair
hma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
rrnAC2267 (uvrD)
03430 Mismatch repair
rrnAC2267 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hma03400
]
rrnAC2267 (uvrD)
Enzymes [BR:
hma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
rrnAC2267 (uvrD)
DNA repair and recombination proteins [BR:
hma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
rrnAC2267 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
rrnAC2267 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_22
Herpes_ori_bp
AAA_11
AAA_25
CBP_BcsQ
Motif
Other DBs
NCBI-ProteinID:
AAV47096
UniProt:
Q5V057
LinkDB
All DBs
Position
I:complement(2016600..2018441)
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AA seq
613 aa
AA seq
DB search
MTDSTTEVVRLFGGPGSGKTTALLDRVDELLEDDDVDFRDVLVVSYTRAAAAEIRERLAD
RLGLSPRALRGNVCTMHAKAYELLNLSRGDVVGEDDKEAFCEEFGIEYEDEYEGSRRRSA
RSTTLGNKIIATSQWLQRTRRDVADWYDVPFKWDDEEVRLPPEIDDNAQTGNKYTPTWPT
DDDRVDVPSVIRGWRTYKGENDLTGFADMLERVAQRSLLPNVDYLIIDEFQDITTLQYDV
YDEWKPHMERVLIAGDDDQVVYAWQGADPDLLLEEVVTQDEVLPNSYRLPSRILNVVNRE
VRHIEKRQEKDLNPRKEGGRVEAVQNPSMFDLSRNVTRTIEQSDETVMVLFRARYQMFQF
IDEFIDNGIPFSCLTDQRMWTDRLTQYVNGLEAVEADEPLTVLEARRLADMLVDSAFGTG
ERDDLFDALEEIDESHEDEDIADIEIEPDVVQEHVPFLPDSASAGDMLRKVTNFQERTVD
AYFTGDYTGMDADRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAATVDQQGIEVPGME
EFTKHTSPIPTLTDNERRVFYVGMSRARERLVLLENLVDGAPTLPIDVLLENEPSDRSIE
QLLDDASETLAAD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgactgattcgaccaccgaggttgtccgcctgttcggtgggcccggtagcgggaagacg
acggcgctgctcgaccgcgtcgacgaactgctggaagacgacgacgtcgatttccgtgac
gtacttgttgtctcgtacacgcgtgcggcggccgccgagatccgtgaacggctcgcggac
cgactcgggctgtcccctcgtgcccttcgcgggaacgtctgtacgatgcacgcgaaggcg
tacgaactgctgaacctctctcgtggcgatgtcgttggcgaagacgacaaggaagccttc
tgcgaggagttcggcatcgagtacgaggacgaatacgaagggtcccggcgtcggtcggcc
cgctcgacgaccctcgggaacaagatcatcgcaacgagtcagtggctccagcggacccgc
cgtgacgtcgccgactggtacgatgtcccgttcaagtgggacgacgaggaggtccgactc
ccacccgagatcgacgacaacgcccagaccgggaacaagtacacgccgacctggccaacc
gacgacgaccgtgttgacgtgccaagcgtcatccgcggctggcgcacctacaaaggcgag
aacgacctgaccggcttcgcagatatgctcgaacgggtcgcccagcgctcgctgctcccc
aacgtcgactatctcatcatcgacgagtttcaggacatcacgacgttgcagtacgacgtg
tacgacgagtggaaaccccacatggagcgggtgctcattgccggcgacgacgaccaggtc
gtctacgcctggcagggcgctgaccccgacctcctgcttgaggaagtcgttacccaggac
gaggtccttccgaactcctatcggctcccctcgcgcattctgaacgtcgtcaaccgcgaa
gtccgccacatcgagaagcgtcaggagaaagacctcaatccgcgcaaggagggcggccgc
gtcgaggcggtccagaacccctcgatgtttgacctctcacggaatgtcacgcggaccatt
gagcagtccgacgagacggtgatggtgctgttccgcgctcgctaccagatgttccagttc
atcgacgagttcatcgacaacgggatccccttctcctgtctcactgaccagcggatgtgg
actgaccgcctcacccagtacgtcaacgggctcgaagccgtcgaagctgacgaaccgctc
acggtgctcgaagcgcgccggctcgctgacatgctcgttgactccgccttcgggacgggc
gagcgcgacgacctctttgacgcgctcgaagagatcgacgagtcccacgaggacgaagac
atcgccgatatcgaaatcgaacccgacgtggttcaggagcacgtcccgttcctccccgat
tcggcctcggcaggcgacatgctccggaaagtgaccaacttccaggagcggaccgtcgac
gcgtacttcaccggcgactacaccggaatggacgccgaccgtgttcgtgtggggactatc
cactccgcgaaaggtcgtgaggccgaccacgtgtttgtcgcgaccgacctcacggagaag
gtcgtcgaacagatggccgcgactgtcgaccagcagggtatcgaggtgcccggcatggaa
gaattcacgaaacacaccagccccatcccgacgctgaccgacaacgaacggcgcgtgttt
tacgttgggatgtcccgcgcccgcgaacggcttgtcctgcttgagaatctcgtcgacggc
gcgccgacgctacccatcgacgtgttgctggagaacgagccaagtgaccgctctatcgag
caactgcttgacgacgccagcgagaccctcgcggctgactga
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