Hydrogenovibrio marinus: HVMH_0002
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Entry
HVMH_0002 CDS
T06677
Symbol
dnaN
Name
(GenBank) DNA polymerase III subunit beta
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03030
DNA replication
hmar03430
Mismatch repair
hmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVMH_0002 (dnaN)
03430 Mismatch repair
HVMH_0002 (dnaN)
03440 Homologous recombination
HVMH_0002 (dnaN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmar03032
]
HVMH_0002 (dnaN)
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_0002 (dnaN)
Enzymes [BR:
hmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HVMH_0002 (dnaN)
DNA replication proteins [BR:
hmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HVMH_0002 (dnaN)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HVMH_0002 (dnaN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_beta_2
DNA_pol3_beta
DNA_pol3_beta_3
Motif
Other DBs
NCBI-ProteinID:
BBN58408
LinkDB
All DBs
Position
1590..2696
Genome browser
AA seq
368 aa
AA seq
DB search
MKISLSRENLLKVLQTVGGVVEKRQTMPILGNILFQINQNTLTVTASDLEIETRASTELE
TSDGDFDVTLPAIKLISIVRSLPDGLTVVLEFEEMRCKLSAGRSNFKLSTLPADDFPTID
LTQAELSFSMQQHQLKQLIHNTAFAMASQDVRFYLNGMLFDISHQTLRVVATDGHRLSTC
STLLETEGLTATQAILPRKGVLELQKLIGDDDSLISFSLAKNYLTVQFEETVFTCKLVDG
RFPDFKRVIPQHNDQLVQTDREVLRSILQRSAILSNDKFKGIRLSLAPNLLAVHAQNSDQ
DESHEDMAIDYQGTQMEIGFNVNYLIDVLNSMHEQTVTLYLKDANSSCMVETQNEACHCQ
HVIMPMRL
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcagtctatcgcgagaaaaccttttaaaagtccttcaaacggtaggaggggtt
gttgaaaaacgccagaccatgccgatcttgggaaatatcttattccaaatcaaccaaaac
acccttactgttaccgcatccgatttagaaatcgaaacgcgagcgtctacagaactcgaa
acaagtgatggcgatttcgacgtcacactgcccgccattaagctcatcagcattgttcgc
tctttaccagacggtttgactgtcgttttggaatttgaagaaatgcgctgtaagctttct
gcaggacgctcgaatttcaaactgtcaacactgcctgcagacgatttcccaaccattgac
ctgactcaagcagaactgtccttctcaatgcagcagcatcagttaaagcaattgattcat
aacactgcatttgcaatggcaagccaagatgtgcgcttctatctgaatggtatgttattt
gacatcagtcaccaaactttacgtgtggttgcgactgacggtcaccgcttgtcaacttgc
tccactcttttggaaacagaaggtctgacagcgactcaggcaattttgccgcgtaaaggg
gtcttggaactacaaaaactgatcggtgatgacgacagcttgatttccttctctttggcg
aaaaactatctgacagttcagttcgaagaaacggtcttcacctgtaaattggttgatggc
cgcttcccagatttcaaacgtgtcattcctcagcataatgatcaattggtacaaaccgac
cgtgaagtacttcgtagcatccttcaacgttcggccattttatcgaatgacaaattcaag
ggcatccgtttgtctctagcgccaaacttgttggcagttcatgcacagaactccgatcaa
gacgagtctcatgaagatatggcgattgattatcaaggcacgcaaatggaaatcgggttt
aacgttaactacctgattgatgttctcaactcaatgcacgagcaaacggttaccctgtac
ttgaaagatgccaacagcagctgcatggtcgagacacaaaacgaagcttgtcattgccag
catgtcatcatgccaatgcgtctgtag
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