KEGG   Hydrogenovibrio marinus: HVMH_0040
Entry
HVMH_0040         CDS       T06677                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
hmar  Hydrogenovibrio marinus
Pathway
hmar03030  DNA replication
hmar03410  Base excision repair
hmar03420  Nucleotide excision repair
hmar03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hmar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HVMH_0040
   03410 Base excision repair
    HVMH_0040
   03420 Nucleotide excision repair
    HVMH_0040
   03440 Homologous recombination
    HVMH_0040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hmar03032]
    HVMH_0040
   03400 DNA repair and recombination proteins [BR:hmar03400]
    HVMH_0040
Enzymes [BR:hmar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HVMH_0040
DNA replication proteins [BR:hmar03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HVMH_0040
DNA repair and recombination proteins [BR:hmar03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     HVMH_0040
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HVMH_0040
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 HHH_2
Other DBs
NCBI-ProteinID: BBN58446
LinkDB
Position
38474..41287
AA seq 937 aa
MTAMQLEFNPKAPFILVDGSSYLFRAFHAMPPLTNSKGHATGAIFGVINMIGKLLEQYQP
ERIAVVFDAKGKNFRHEMYEEYKAHRPPMPDELRIQIEPIHQIIKALGIPLLVIDGVEAD
DVMGTLAQQATEAKMDALLSTGDKDMAQLVNEHITLINTMNDTLMTPEKVLEKFHVKPEQ
IIDYLALMGDSSDNIPGIPKCGPKTAAKWLEEYGTIENLINHADEIKGKIGESLRDNLDQ
LKLSQQLTTIRIDCDLPVHLSDIKRHTPDVQALAELFAEYDLRNWQGQIAKGQLPFSKFT
GRKAHSATLVSEHNGKHHSNPAQPATSENFEIAPYETILDESTFEQWLTKLKEADCFAID
TETTSLDTMIAQIVGISFAYESSGKIHAAYVPLKHDYEGAPNQLDFEQALSRLKPILESE
QIQKVGQNLKYDWHVFMNHGIELKGIAYDTMLESYCLNSVATRHNMDDLALKYLNHSTIH
FEDIAGKGKNQLTFNQIPVEQAAPYAAEDADITLRLHFTIWPQLKKDEGPCRIFKDIEMP
LLTVLAKTERNGVLIDKQMLADQSYEIGEKLVQLEQDAHLIAGTPFNLNSSKQLQEVLFD
RLNLPVLKKTPKGQPSTAEPVLAQLADEGHELPTLILEYRSLAKLKSTYTDSLPKQINEK
TGRVHTSYQQAVASTGRLSSTEPNLQNIPVRNAEGRRIRQAFIAPKGYKIVAADYSQIEL
RIMAHLSGDANLVTAFTEGKDIHQATAAEIFGMPLESVTSEQRRSAKAVNFGLIYGMSAF
GLAKQLNIPRNLAQEYINLYFSRYPSVQTYMESTQANARENGYVETLLGRRLYLPDINAK
NGQLRQYAERTAINAPMQGTAADIIKRAMIDIQKWLDTSDLNLKMLMQVHDELVFEVAEK
DIEAAQPEIKRIMEAALSLDVPLIVEVGQGDNWDEAH
NT seq 2814 nt   +upstreamnt  +downstreamnt
atgacagcaatgcaacttgaattcaatccaaaagcgccctttattctcgtagacggttct
tcttatctattccgcgcttttcacgccatgcctcctttgacaaattccaaaggtcatgcc
actggcgcaattttcggtgtgatcaatatgatcggaaaattgttggagcaatatcaacct
gaacgcattgccgtggtattcgatgccaaaggcaagaacttccgtcatgaaatgtatgaa
gagtacaaggcgcatcgcccaccgatgccagatgaactgagaattcaaatagaaccgatt
caccaaattatcaaagcgttaggaatccctcttttggtgattgacggtgttgaagccgat
gatgtcatgggaacccttgcacaacaagccactgaagcgaaaatggacgctctattgtca
acgggtgataaagatatggcgcaactggtgaatgaacatatcacccttatcaacactatg
aatgacacgttgatgacaccggaaaaggtgttggaaaagtttcatgtgaaacctgaacaa
ataatcgactaccttgccttgatgggcgacagctcagacaatattccaggaattccgaaa
tgcggtccaaaaacggcggcaaagtggctggaagagtacggcaccatcgaaaatttgata
aaccatgccgacgaaatcaaggggaaaattggggaaagtctgcgagataacttggatcaa
ttaaaactgtcacaacaattgacaacaatccgcattgattgcgatttgccggttcacctc
agtgacatcaaacgccatacacccgatgtccaggcattggcagaactttttgccgagtat
gacctacgaaactggcaaggacaaatcgcgaaaggccagcttccattcagcaagttcaca
gggcgcaaagcgcatagcgcaaccctggtcagtgaacataatggcaaacaccactcaaac
ccagcccagcctgcaacatcagaaaacttcgaaatcgcgccctacgaaacgattttggat
gaaagcacttttgaacaatggctgacaaaacttaaggaagccgattgtttcgccatagat
actgaaaccacctcattagataccatgatcgcccaaatcgtcggtatcagttttgcatac
gaatcatctggcaagattcacgcggcttatgttccgttaaagcatgactatgagggtgcg
cctaaccagctggatttcgaacaagcactcagccgcctgaaacctattttagaaagtgaa
caaatccagaaagttggacaaaacctgaaatatgattggcatgtttttatgaatcatggc
attgaactaaaggggattgcctacgacaccatgttggaatcctattgtttgaacagcgtg
gcaacgcgtcacaatatggatgacttggctttgaaataccttaaccatagcactatccat
ttcgaagacatcgctggtaagggcaaaaatcaactgacattcaaccaaattcctgttgag
caggctgcgccttatgctgcggaagatgccgatattactttgcgactgcatttcactatt
tggccacaactgaaaaaagatgaagggccttgccgcattttcaaagacattgaaatgcct
ttgttaacggtcttggcaaaaaccgaacgtaacggtgtactcatcgacaagcaaatgctc
gccgatcaatcttatgagattggtgaaaaactggttcaacttgaacaagatgctcacttg
attgcaggaacgccattcaacctgaattcttccaaacagctacaagaagtactgtttgat
agattgaatctacccgttttgaaaaagacaccaaaaggccaaccctcaactgcggaacct
gttttagcgcaactggcagatgaaggtcacgaattaccaactttgattttagaataccgt
agcttggcaaaattgaaatccacctacaccgatagtcttccaaaacaaatcaatgaaaaa
accgggcgcgttcatacttcttatcagcaagcggtggcttcgactggacgcttatcgtct
acggaaccaaatttgcaaaacatccccgttcgtaatgccgagggtcgtcgtattcgccaa
gcgtttattgcaccgaaggggtataaaatcgttgccgcagattactcgcaaattgaactc
cgcatcatggcacatttatcaggagacgccaatttagtcacagcattcactgaagggaaa
gatatccaccaagcaactgccgcagaaatttttggtatgccacttgaaagtgtcactagc
gaacagcgtcgtagtgccaaagcagtgaacttcggattaatttatggtatgtccgcattt
ggcttggcaaaacagttgaatatccctagaaatctagctcaggaatacatcaacctgtat
ttcagccgctaccccagcgtgcaaacctatatggagagtacccaagcgaatgcgcgtgag
aacggttatgttgaaaccttattggggcgccgtctttatttgcccgacatcaatgctaaa
aatggtcaactacgtcaatatgccgaacgtacagctattaacgcgccgatgcaaggcacc
gctgccgatattattaaacgtgcgatgattgatattcaaaaatggttagatacgtccgat
ttgaacctcaaaatgttgatgcaggtacatgatgaattggtttttgaagttgcagaaaag
gatatagaggctgctcaaccggagatcaaacgcataatggaagccgctttatcactagat
gtgcctttgattgttgaagtcggtcaaggtgacaactgggatgaggcgcattaa

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