Hydrogenovibrio marinus: HVMH_0123
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Entry
HVMH_0123 CDS
T06677
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HVMH_0123 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmar03021
]
HVMH_0123 (rho)
03019 Messenger RNA biogenesis [BR:
hmar03019
]
HVMH_0123 (rho)
Transcription machinery [BR:
hmar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HVMH_0123 (rho)
Messenger RNA biogenesis [BR:
hmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HVMH_0123 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
ATPase_2
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BBN58529
LinkDB
All DBs
Position
complement(142646..143905)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKKMSVSALLDLASEKGLENLARLKKQDIIFAILKSHSKSGEDIYGEGVLEILPD
GFGFLRTADGSYLAGPDDLYVSPSQIRRFGLRKGDTIQGKIRPPKEGERYFALLKVEKIN
FEDPDVARKKIAFENLTPLHAQERLKMEMGNGSTEDITTRIIDIAAPFGKGQRGLIVAPP
KSGKTVILQQIAQSIAENHPECYLIVLLIDERPEEVTEMERTVKGEVISSTFDEPATRHV
QVAEMVIEKAKRLVEHKTDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRNIAEKRTFPAINI
EKSGTRKEELLTTPEEYQNIWVLRRFLHGLNNEIEAIETLIDQMKVTKTNEELFMAMKR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaactgatttaaaaaaaatgtccgtctccgcgttattggatcttgcctctgaa
aaaggcttagaaaacttagcgcgtttaaagaaacaagatattatctttgctattttgaaa
tctcactccaaaagtggtgaagatatttatggtgaaggggtattagaaatccttcccgat
ggcttcggcttcttgcgcactgctgatggttcttaccttgcaggacctgatgacctttat
gtttcacctagccaaatccgtcgtttcggtttgcgcaaaggggacaccatacaaggtaaa
atccgtcctccaaaagaaggtgagcgctattttgctttgttgaaagttgaaaaaatcaac
ttcgaagaccctgacgtagcgcgtaaaaaaattgccttcgaaaacttaaccccacttcat
gctcaagaacgcttgaaaatggaaatgggtaatggttcgactgaagacattactactcgt
attatcgatattgcagcacctttcggtaaagggcaacgtggtttgattgttgcaccgcca
aagtctggtaagaccgtgattttgcaacagatcgcgcaatcgattgctgaaaaccatcca
gaatgttacctaatcgttctactgattgatgaacgtcctgaagaggttactgagatggaa
agaaccgttaaaggtgaagtaatctcttcaacttttgacgagccagcaactcgccacgtg
caagttgcggaaatggttatcgaaaaagccaagcgattggttgaacacaaaaccgacgtg
gtcattcttttagactccatcactcgtttggcccgtgcctacaacacggtgacaccagct
tcaggaaaaatcctatctggtggtgttgatgcgaacgcattgcatcgtccaaaacgtttc
ttcggtgcggctcgtaatatcgaagaaggtggttctttaacgattatcgcaacagcgctg
gtcgatacaggttctaagatggatgaagttatctttgaagaattcaaaggtaccggtaac
atggaactgcatctatcaagaaacatcgcagagaagcgcaccttcccagcgatcaacatc
gagaaatccggtacgcgtaaagaagagctgttgaccacgccggaagagtatcaaaatatt
tgggtacttcgtcgtttcctacatggcttgaacaacgaaatcgaagccatcgaaactttg
atcgatcagatgaaagtaacaaaaaccaacgaagagctctttatggcaatgaagcgataa
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