Hydrogenovibrio marinus: HVMH_0361
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Entry
HVMH_0361 CDS
T06677
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HVMH_0361 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmar03021
]
HVMH_0361 (rpoA)
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_0361 (rpoA)
Enzymes [BR:
hmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HVMH_0361 (rpoA)
Transcription machinery [BR:
hmar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HVMH_0361 (rpoA)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HVMH_0361 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BBN58767
LinkDB
All DBs
Position
390654..391634
Genome browser
AA seq
326 aa
AA seq
DB search
MQEMLEQLLTPRLVDIKKVNGFHSRVTLEPLERGFGHTLGNALRRILLSSMPGAAIVEAQ
IDGVLHEYSSIEGVREDVLEILLNLKEVSIKLNESSEAELTLSKKGPAVVTAGDIQLNHD
TEVMNPDLVIAHLSEGAELSMTLKVEKGIGYRASVQSDDTSIGSLKLDASFSPVQTVSYE
VQNARVEQRTDLDKLILDVVTDGTLDPEDAIKQAATVLHYQLIAFVDLKHKEIVVQEEEE
NEFDPIYLQPVDDLELTVRSANCLKAEQIYYIGDLVQRAESSLLKTPNLGKKSLQEIKDV
LAQRGLGLGTKLENWPPSSLVSKESA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaatgctagagcagctactgactccacgtttagtagatatcaaaaaagtaaat
ggttttcatagccgtgtgactttagagccattagaacgtggttttgggcatacgcttgga
aatgctctaagaagaattcttttatcatcaatgccaggtgctgcgattgtagaagcacaa
attgatggtgtactacatgagtactcatcaattgaaggtgtacgtgaagatgttttagag
attcttcttaatttaaaagaggtttctattaaattaaacgaaagctctgaggctgaatta
actctaagcaagaaaggtccagctgttgttactgctggcgatattcagctaaatcatgat
actgaagttatgaatccagacttggttattgctcacttaagcgaaggcgctgagttgtca
atgactttaaaagtggaaaagggaattggttatcgtgcatcggtacagtctgatgatacc
tctattggttcattgaaactggatgcaagtttcagccctgttcaaactgtaagctatgaa
gtgcaaaatgcacgtgtagaacagagaacagacttagacaaattaattcttgatgttgta
actgatggaactctagatcctgaagatgcaatcaaacaagcagcgactgtattacattac
cagttgattgcgtttgttgatctgaagcataaagagatcgttgtacaggaagaagaagaa
aacgaatttgatcctatttatctacaaccagtagatgatttggaattgactgttcgttca
gcgaactgcttgaaagctgagcagatttactatatcggtgatcttgtacaaagagcagaa
tcaagcttattgaaaacgcctaatttaggtaaaaaatctttgcaggaaatcaaagacgtg
cttgcacaaagaggtcttggtttaggaacaaaactcgaaaactggccaccttcaagcttg
gtcagcaaagagtcagcataa
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