Hydrogenovibrio marinus: HVMH_0413
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Entry
HVMH_0413 CDS
T06677
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar00300
Lysine biosynthesis
hmar00470
D-Amino acid metabolism
hmar01100
Metabolic pathways
hmar01110
Biosynthesis of secondary metabolites
hmar01120
Microbial metabolism in diverse environments
hmar01230
Biosynthesis of amino acids
Module
hmar_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HVMH_0413 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HVMH_0413 (lysA)
Enzymes [BR:
hmar01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
HVMH_0413 (lysA)
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF1955
DUF3825
Motif
Other DBs
NCBI-ProteinID:
BBN58819
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Position
complement(445026..446279)
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AA seq
417 aa
AA seq
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MSFDAFQYRNNTLHAENVALTELANSYGTPLYVYSRKALESRWTAFDQAFGTQPHLVCYA
VKTNSNLAVLNVLAKLGSGFDIVSQGELERVLKAGGDAKKVVFSGVAKKPSEIRRALEVG
IRCFNIESHAELDRLQEVAESMDKVAPISVRVNPDVDAKTHPYISTGLKDNKFGVDINTA
PALYAKAQSLSHISIQGIDCHIGSQLTEIAPFVDALERVLKLKSDLAAQGIEIHHLDLGG
GLGIQYTDEQPPEIATYIQALLTKLNDPSIEVIIEPGRAIAGNAGVLLTEVEYLKPTDHK
NFAIIDAAMNDLIRPALYQSHQHIQAVTPRTDGEDTSWDLVGPVCETGDFLGKNRTLNLK
AGDFLAVMSSGAYGFTMSSNYNTRPRAAEIMVDGDQAFVIRPRETYEDLMGTETLLP
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgacgcatttcaatatcgcaacaatacccttcatgccgaaaatgttgctctg
acggaactggcaaacagctatggcacgccgctatacgtttactctcgtaaagcactggaa
tcgcgctggacagcgtttgaccaagctttcggcactcagccacatttagtttgctatgcg
gtgaaaaccaactcaaatctggcggtattgaacgtgctggcaaaactgggatccggcttt
gatatcgtttcacaaggcgaattggaacgtgttctcaaagctggtggtgacgcgaaaaaa
gtcgttttttccggggttgccaaaaaaccttctgaaatccgtcgtgcattggaagtcggc
attcgttgtttcaacatcgaatcccacgccgagctagatcgccttcaggaagtggcagag
tccatggacaaagtcgcgccaatttctgtgcgcgtcaacccggatgtcgatgcaaaaacc
cacccttatatttctacgggtttaaaagacaataaattcggtgtcgatattaatacagcg
cctgcgctgtatgcaaaagcacaatcactatcgcacatttccatccaagggattgattgc
cacattggttctcagttgacggaaatcgcgccttttgttgatgccctggaacgtgtcttg
aaactaaaatctgacttggctgcacaaggcatcgaaatccatcacctagacttaggcggt
ggactagggattcaatacaccgatgagcaaccaccggaaatcgcaacttacattcaagca
ttgctgactaaattgaacgatccaagtatcgaagtcattattgagccggggcgagccatt
gccggtaacgctggcgtattgctgacagaagtggaatatctaaaaccgactgaccacaag
aattttgcgattatcgatgccgccatgaatgatttgattcgtccggcgctttatcaatct
caccagcatattcaagcggtcacaccaagaacggatggtgaagacaccagctgggatttg
gttggcccagtctgtgaaactggcgacttcctaggcaaaaatcgcacgctgaatttaaaa
gcgggtgatttcctagcggtaatgtcttctggcgcctacggcttcaccatgagctcaaac
tacaatacgcgcccaagagcggcagaaatcatggtggatggtgatcaagcctttgtaatt
cgtcctcgtgagacttacgaagacttgatgggaacggaaaccctactgccataa
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