Hydrogenovibrio marinus: HVMH_1012
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Entry
HVMH_1012 CDS
T06677
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03030
DNA replication
hmar03430
Mismatch repair
hmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HVMH_1012 (dnaQ)
03430 Mismatch repair
HVMH_1012 (dnaQ)
03440 Homologous recombination
HVMH_1012 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmar03032
]
HVMH_1012 (dnaQ)
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_1012 (dnaQ)
Enzymes [BR:
hmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HVMH_1012 (dnaQ)
DNA replication proteins [BR:
hmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HVMH_1012 (dnaQ)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HVMH_1012 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BBN59418
LinkDB
All DBs
Position
complement(1076751..1077431)
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AA seq
226 aa
AA seq
DB search
MDTETTGLDPKSGDKIIEIGAVELVERKLTHKNYHQYIQPERDVPEDAIAVHGITNEFLE
DKPIFSDVVDDFMAFVAGAELIIHNAPFDVGFINHELSQLKNNRWGKIEDHCTITDSLKM
ARKSFPGQRNTLDALCKRFGIDNSNRTLHGALLDSEILADVYLAMTGGQTALSLHEEYEG
NVSGNVVQLDVNRPKLKVLKATDDELMRHQQKLEAISKKFGETLSW
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atggatacggagaccaccggtcttgacccgaaaagcggtgacaaaatcatcgaaatcggt
gccgtggaactcgtcgaaagaaaactgacccacaaaaattatcatcaatatatccagcct
gagcgtgatgtgccagaagatgcgatcgccgtacacggtatcaccaacgaatttcttgaa
gataagcctattttttcagatgttgtcgatgactttatggcgtttgtcgctggtgctgag
ctgattatccataacgcacccttcgatgtcgggttcatcaaccatgaactgtctcaattg
aagaataaccgttggggcaaaattgaagatcactgtaccattactgacagtttgaaaatg
gcgcgtaagtccttccctgggcagcgcaatacgttggatgccttgtgcaaacgcttcggt
atcgacaactccaaccgaacgctccacggggctttactcgactccgaaatcctagccgac
gtctacctggcgatgacaggtggacaaactgccctatcactccatgaagaatacgaaggc
aatgtatcaggcaacgttgtacaactggatgtcaatcgaccgaagttaaaagtgctgaaa
gcaaccgatgatgaactgatgcgccaccaacaaaagttggaagcgatcagtaaaaaattt
ggtgaaacgcttagctggtag
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