Hydrogenovibrio marinus: HVMH_1139
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Entry
HVMH_1139 CDS
T06677
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hmar
Hydrogenovibrio marinus
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmar03016
]
HVMH_1139 (truB)
Enzymes [BR:
hmar01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HVMH_1139 (truB)
Transfer RNA biogenesis [BR:
hmar03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HVMH_1139 (truB)
Prokaryotic type
HVMH_1139 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
DUF2491
Motif
Other DBs
NCBI-ProteinID:
BBN59545
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All DBs
Position
1209827..1210723
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AA seq
298 aa
AA seq
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MTKKQWQRVDGIVLIDKPEGMTSNDLLQKVRRIYQAKKAGHTGALDPFATGLLPICFGEA
TKISGLLLDSDKRYQATLKLGVATDTGDKDGEVAQQASIPELSQEKIEGVLNSFIGEVAQ
VPPMYSALKHKGKPLYEYARQGIEIERPARNIRVLEIKLLGFESDEIRFEVFCSKGTYVR
TLGEDIAKVLGTVGHLTALRRLQTGSLTADDMHTMEVVSQNPDDYLQALDLPLEHLQAMH
LNELDTQTIQHGGKLAVEKPQTDLVRFYDDKERFFGVGEWQFEKNLLKPKRLFNLADD
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaacaatggcaacgagtggacggcattgtcctgatagataaaccggaagga
atgacttccaatgacctgctgcaaaaagtaagacgaatttatcaggctaaaaaggccggg
cacactggcgctctggatccgtttgctaccggattgttaccgatatgctttggtgaggcc
accaagatttccggactgcttctggactcggataaacgttatcaagcaacactaaagcta
ggtgtggcaaccgatacaggagataaggatggagaagttgcacaacaagcatccattccc
gaattgtctcaggaaaaaatagaaggcgtattgaacagctttattggtgaggttgcgcaa
gtaccgcccatgtattcagcattgaaacacaaaggaaagccgctctacgagtatgcaaga
caaggtattgagatagaaagacctgctcgaaacattcgagtattggaaatcaagttactc
ggctttgaatcagatgaaattcggtttgaagttttttgctcaaagggaacctatgtccgc
actcttggagaagatattgccaaagtgctaggaactgtcgggcatttgactgcgttacgt
cgcttgcaaacaggttcattgactgcagatgatatgcatacaatggaagtggtatcacaa
aatccagatgactatcttcaagcacttgatttgcctttggagcaccttcaggcaatgcat
ttaaacgagctagatactcaaactattcagcatggtggcaagttggcggttgaaaagccg
caaacggatttagttcgtttttatgatgataaagagcgctttttcggtgtgggcgagtgg
cagtttgaaaagaatctgttgaagccgaagcgtctatttaatctggcagacgattaa
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