Hydrogenovibrio marinus: HVMH_1173
Help
Entry
HVMH_1173 CDS
T06677
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HVMH_1173 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmar03400
]
HVMH_1173 (mfd)
Enzymes [BR:
hmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HVMH_1173 (mfd)
DNA repair and recombination proteins [BR:
hmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HVMH_1173 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
bHLH_ILI
Motif
Other DBs
NCBI-ProteinID:
BBN59579
LinkDB
All DBs
Position
complement(1253536..1257066)
Genome browser
AA seq
1176 aa
AA seq
DB search
MAQNASNQPSAYSIQALINLPFKGQRSHWQVSNLAETAWLLSEKIKATPNLAVFLTASTH
EANKLEEAVNFFAGETFPILNFPDWETLPYDQFSPHQDIISQRLKTLHQLPSLKQGLLIL
PVSTLLQKVVPHHFIDKYTFFLKTQDNIDIEAFNRQLETGGYQRVNQVVEPGEFAVRGSL
IDVFPMGSKTPFRLDLFDDEIESIRSFDPENQRTLDAIEQIELLPAKEYDLSDAGIQLFR
QNFRTQFGEDARHATLYKAVSDHQTLDGLEYYLPIFHETLATLFDYLPQDSLFFDNGDLS
DGIQRTWNDYQERYQIAQHNPDYPVLPPALLISNETDTLAKLKQYHRVTFERIQGAKTNA
RLANKPLPDLSIQNNADYPLAKLNAFVDRLFNDKLKNDKHNQNVRLLYCAESTGRRETLL
ALLKKEKTLSGPQPTIADSWQDFIHADTKCAIVVGPLEESLYVSASDATPDICVISETQI
FGETVTQRRRRKQKHSDFDTSISNLIELEVGDPIVHIDHGVGRYQGLITMNIQDEDHELL
CIEYADEAKLYVPVTSLHLISRYTGASAENAPLHKIGSDRWKKAKRKAAEKVHDVAAELL
DIYAQREARPGFAFETDEQAYARFRAGFPFEETPDQEAAIEAVLADMASPKPMDRLVCGD
VGFGKTEVAMRAAFIAAYSGKQVAILVPTTLLAQQHLENFQNRFADWPIKVEGLSRFQSA
KETQRILEDAKEGKVDIIIGTHKLIQGDTQFKNLGLIIIDEEHRFGVRQKEQLKKMRTEV
DVMTMTATPIPRTLNMAMNDLRDLSIIATAPEKRLAVQTFVQEWNPDVVKEACLREIRRG
GQIYLLYNNVDKIDNMVEEMQALLPEASVRSAHGQMNERELEHVMQDFYHRRFNILVCTT
IIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGRSHHKAYAYLFTAGKSLMTKDAEKR
LAAISKHDTLGAGFMLASHDLEIRGAGELLGDGQSGQIQEIGFGLYAELLDRAVRALKSG
KQPELDTSLHHGTEIELGVPSLIPEDYLPDIHTRLVFYKRIAGAKDTQSLRELEVEMIDR
FGLLPDQVKNLFAATSVKLLVEPMNLLKVEAHETMIRIQFGSSPNIDPLRLIQLIQRQPK
NYQLKGQTELKYFDTMPETAQRIQAIELIVASIKAG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaacgcttcaaatcaaccatccgcctactcaatccaagcgctcatcaacctt
ccattcaaaggtcagcgctctcattggcaagtttccaacctggcggaaaccgcttggctg
ctcagtgagaaaatcaaggcgacccccaacctggcagtttttttaaccgccagcacacat
gaagcaaacaagctggaagaagccgttaacttctttgctggagaaacctttcccatcctg
aactttccggattgggaaaccttaccttacgaccagttctccccacaccaagacatcatt
tcccagagactgaaaaccttacatcaactaccaagcttaaaacaaggcttgctcattcta
cccgtttccacactattacaaaaagtggttcctcatcactttatcgataagtacactttt
ttcctgaaaacacaggacaatatcgatattgaagcctttaaccgtcaacttgaaacaggt
ggctaccaacgcgtaaaccaagtggttgaaccgggtgaatttgccgtgcgaggctcgctg
attgatgttttccctatggggagcaaaaccccttttaggctagatctattcgatgatgaa
atcgaaagcatccgcagttttgacccggaaaaccaacgaactctagacgccattgagcaa
atcgagttgttgcccgcaaaagaatacgatctaagtgatgcaggtattcagcttttccgt
caaaacttccgtacccagtttggtgaagatgcgcgccacgccacactttataaagcggtc
agtgaccaccaaacccttgatggattggaatactaccttccgatattccacgaaacactg
gcaacgttatttgactacttaccacaagacagcctgttcttcgacaatggcgacctgagc
gacggcattcaaagaacttggaacgactaccaagaacgttatcaaatcgcacagcacaac
ccggattatccagtattgccaccagcactgctgatttcaaatgaaaccgatacccttgcg
aagttaaagcaatatcaccgcgtcacctttgaaagaattcagggggcgaaaacaaatgct
cgacttgccaacaaaccgctaccggatttaagcattcaaaacaacgctgattaccctctg
gcaaagttaaatgcatttgttgatcgtctattcaacgacaaacttaagaatgataaacac
aaccaaaacgtgcgtttgctctactgtgctgagtcaaccgggcgtcgcgaaacactgctg
gccttactcaaaaaagaaaaaaccctgagcggtccgcaaccgaccattgccgattcttgg
caagattttattcatgctgataccaaatgtgccatcgttgtcgggcctttggaagaaagt
ctttatgtatccgccagtgacgctacgcctgatatctgcgttatttcagaaacgcaaatt
ttcggtgagaccgttactcaacgccgtcgtcgtaagcaaaaacacagtgatttcgatact
tcaatctccaacctgattgagttggaagtcggtgatccgattgtacacatcgaccacggt
gtcggtcgctatcaaggtctcatcaccatgaatatccaagatgaagaccatgagttgctg
tgtatagagtatgctgacgaagccaaactttatgttcctgtcacctccttacacctgatt
agccgctataccggcgccagtgcggaaaatgcaccgcttcataaaatcggttcagaccgc
tggaaaaaagccaaacgtaaggcagccgaaaaagtccatgatgtcgccgcagagttactg
gatatttacgcgcaacgtgaagcacgccctggttttgcttttgaaaccgatgagcaagcc
tatgcacgcttccgtgctggatttccatttgaagaaaccccggatcaggaagccgctatc
gaagcagtacttgccgatatggcctctcctaaaccaatggatcgattggtgtgtggtgat
gttggtttcggtaaaacagaagttgccatgcgcgcagcctttatcgctgcttattcaggc
aagcaagtcgccattttggttccgacgacgctacttgcccaacagcatttggaaaacttc
caaaaccgttttgccgactggccaatcaaagttgaaggtttgtctcgctttcaatcggca
aaagaaactcaacgcattctggaagacgctaaagaaggcaaagtcgacattattattggc
acgcacaaattgattcagggtgacacccagttcaaaaaccttggcctgattatcattgat
gaagagcatcgctttggcgttcgtcaaaaagaacaattaaaaaaaatgcgcactgaagtg
gatgtcatgaccatgacggcaacccctattccgcgcaccttaaacatggcgatgaacgat
ttgcgtgatttgtctattatcgccactgcaccggaaaaacgccttgcggtacagaccttt
gttcaagagtggaatcctgacgttgttaaagaagcctgcctgcgtgaaattcgccgtggc
ggtcaaatctacctgctttataacaatgtcgacaaaatcgacaacatggttgaagaaatg
caagccttgttgcccgaggcttccgttcgctccgcgcatggtcagatgaacgagcgcgag
ctggaacatgtcatgcaggacttctatcaccgccgcttcaatattttggtctgtaccacc
attatcgaaacggggattgatatcccaaccgccaacaccatactgattcaccgcgcggat
aaatttggtttggcacagctacatcagctacgtggtcgcgtcggacgctctcaccataag
gcttatgcttacttgtttaccgcaggcaaatctttgatgaccaaagatgccgagaaacgt
ctagcggcgatttccaaacatgacacgttgggcgcgggcttcatgctggcaagtcatgac
ttggaaatccgtggcgctggtgagttactgggagatggtcaatcaggacagattcaggaa
atcggtttcggattgtatgccgagctgcttgatcgcgctgtcagagccttaaagtcaggt
aaacaacctgagttggataccagcttgcatcatggtacggaaatcgaactgggcgtgccg
tccttgattccggaagactatctacctgacattcacactcgactggttttctataaacgt
attgccggcgcaaaagacacgcaaagtctacgcgaacttgaagtggaaatgattgaccgt
ttcgggctgttgcccgatcaggtgaaaaacctgtttgcggcgacatccgttaagttactg
gttgaacctatgaacttacttaaagtcgaggcacatgagacgatgatccgcatccaattc
ggttcttcgccgaacattgacccgctgagattgattcaactcatccagcgccagcccaaa
aattatcagctaaaagggcaaacggaactgaaatatttcgatacaatgccggaaacagcg
caaagaattcaagccatcgagctcattgtggcttcaataaaagccggataa
DBGET
integrated database retrieval system
