Hydrogenovibrio marinus: HVMH_1975
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Entry
HVMH_1975 CDS
T06677
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hmar
Hydrogenovibrio marinus
Pathway
hmar00300
Lysine biosynthesis
hmar00470
D-Amino acid metabolism
hmar01100
Metabolic pathways
hmar01110
Biosynthesis of secondary metabolites
hmar01120
Microbial metabolism in diverse environments
hmar01230
Biosynthesis of amino acids
Module
hmar_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HVMH_1975 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HVMH_1975 (dapF)
Enzymes [BR:
hmar01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
HVMH_1975 (dapF)
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
BBN60381
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Position
complement(2100344..2101183)
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AA seq
279 aa
AA seq
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MGAKLHFSKMHGLGNDFMVIDAIAQDVLLSAEQIRGWADRHFGVGFDQLLLVEATDTDGV
DFRYRIFNADGSEVQQCGNGARCFAKFVYDKGLTDKTEITVETASGVIVLYITENGEVRV
NMGAPNFAPNSLPFSVPGESDVYQLEVDGEFYQIGAVSMGNPHAVLRVTDLGAAPVAELG
AKIESHAHFPERVNVGFAECIDSGHIKLRVYERGAAETLACGTGACAAMVSLRKLGEVAD
EVKVSLPGGDLTIAWDGDASHPVWMTGPAVMVFDAEIAL
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgggcgctaagctccacttcagtaaaatgcatggacttggaaacgactttatggtgatt
gatgccattgctcaggacgttttattgtctgctgaacaaattcgcggatgggcggataga
cactttggtgtggggttcgatcagttattattggttgaagcaacggataccgacggggtg
gattttcgttatcgaattttcaatgcggatggttccgaagtgcagcagtgcggtaatggt
gcgcgctgtttcgcgaagtttgtttacgacaaagggttgaccgacaaaaccgaaatcacg
gttgagacggcttctggcgttattgtgctttatatcactgagaacggagaggttagggtc
aatatgggggcaccgaactttgcaccaaacagtttgccattttctgtgccgggtgagtct
gatgtttaccaattggaagtggatggtgagttttaccaaatcggcgcagtctctatggga
aacccgcatgcggttttgcgtgtcacggatttgggggcggcgccagtagcagaattgggt
gcgaaaattgaatcccatgcacattttccagaaagggtgaatgtcggttttgctgagtgt
attgattcaggccatattaagttgcgtgtctatgaacgtggagcagctgaaacccttgca
tgtggaacaggggcttgcgctgcgatggtaagtttgcgtaagctgggagaagtcgctgac
gaggtcaaggtttctttacctggcggtgatttgaccattgcttgggatggtgatgcgtca
catcctgtttggatgacggggccagcggtgatggtgtttgatgccgaaatagcgctctaa
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