Hydrogenovibrio marinus: HVMH_2006
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Entry
HVMH_2006 CDS
T06677
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
hmar
Hydrogenovibrio marinus
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hmar03009
]
HVMH_2006 (srmB)
Enzymes [BR:
hmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HVMH_2006 (srmB)
Ribosome biogenesis [BR:
hmar03009
]
Prokaryotic type
rRNA helicases
HVMH_2006 (srmB)
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BBN60412
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All DBs
Position
2135077..2136309
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AA seq
410 aa
AA seq
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MTFEELELDPVLLAAIEEQHFHKPTPVQAEVIPEFILRKDILAGAATGTGKTAAFVLPML
QVLLDEPRPSKWPRALILAPTRELAFQIHKVVKQLSTHCEFRSNIVTGGFASDKQLDNLT
GPLDILVATPGRLLNIMSKEFIDLSYIDMVIIDEADRMLDMGQGPDVLALLEAIPTDFQA
ACFSATLGGSGVERFAEDILDDPVIVQIDAPNQQSQQVQQQLYFADDRDHKRALLKNMLE
DDSCKSALVFCNKRDRAIELEAWLLEQGVSADVLHGDMIQAKRLEITKKFTQGKTKVLVA
TDVAARGLDMLNITHVINYDLPHRGDIYIHRIGRTGRGQNVGIAISLVEPHDLKQVERIQ
YHMQAKIPVYKIEGLEPKFNTGKPKKTVKKPHKKKLAKKAAKVKKTAKKK
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaacttgaactagacccagttttactggctgcaatcgaagagcagcat
ttccacaagcctactccggttcaagctgaagtcatcccagaattcattttgcgtaaagac
atcctagcaggggctgccaccggcacagggaaaaccgccgctttcgttttgccaatgctg
caagttctactggatgagccacgcccatccaagtggccgagagctttgattctggcgcca
acacgcgagttggctttccagatacacaaggttgtcaaacagcttagtacccattgtgaa
ttccgctccaatatcgttacaggaggcttcgcttccgacaaacagctagacaacttaacc
ggtccgctcgacattctggtcgccacgcctggtcgtctgctcaatatcatgtcgaaagaa
ttcatcgacctatcctatatcgatatggtgattatcgacgaagccgaccgtatgctcgat
atggggcagggcccagatgttcttgcgctgttggaagcgattccgactgatttccaagcc
gcttgtttctcggcaacactaggcggttctggggttgaacgttttgctgaagacatactg
gacgatccggtcatcgtacaaatcgacgcgccgaaccagcaatcacaacaagtgcaacaa
caactttattttgctgacgaccgcgaccacaaacgcgctttactgaaaaacatgctcgaa
gacgatagctgcaagagtgcgctggttttctgtaacaaaagagatcgcgccattgaactg
gaagcttggttattggagcaaggcgtttctgccgatgtacttcatggcgacatgattcaa
gccaaacgtttggaaatcaccaagaagttcacacaaggcaaaacaaaagtcctagtggcg
acggatgttgccgcccgtggcttggacatgctcaacatcacacatgtcatcaactacgac
ctaccgcatcgcggcgatatttacattcaccgcattggtcgtactggtcgtggacaaaat
gtcgggattgccatcagcttggtggaaccgcacgatttgaaacaagtcgaacgtattcaa
taccacatgcaagccaagattcctgtctacaaaatcgaagggcttgaacctaaattcaat
accggaaagccaaagaaaacggtcaagaaaccgcataaaaagaaactggctaagaaagct
gcaaaagttaaaaaaaccgctaagaagaaataa
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