Hydrogenovibrio marinus: HVMH_2293
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Entry
HVMH_2293 CDS
T06677
Symbol
yncD
Name
(GenBank) ligand-gated channel
KO
K02014
iron complex outermembrane recepter protein
Organism
hmar
Hydrogenovibrio marinus
Brite
KEGG Orthology (KO) [BR:
hmar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hmar02000
]
HVMH_2293 (yncD)
Transporters [BR:
hmar02000
]
Other transporters
Pores ion channels [TC:
1
]
HVMH_2293 (yncD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
Motif
Other DBs
NCBI-ProteinID:
BBN60699
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Position
complement(2461240..2463360)
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AA seq
706 aa
AA seq
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MKILGGQNMPKLKKLPLGICLAILSMSAKAETSLDAVTVTATKQERKALDVSQSVDVVKS
ETIQKKNARNINDIIKTMPGVIAVSKNGGYDSRLIIRGAGLKAPYGVREIMVLRDGVPMT
DPDSFTRFDFVDIDDISSVEVFKGPGSIEASNASGGVLAINSISVFDGTKDYVKLGAGSE
TSRNAALHKTWEAGQNDNISIQLSRRQADNNWRQWNQFDTTQFSIKEGHFFKGESTLETE
LSYQESNLQLPGSLNAAGYAKYLQSGQTLNDKANTGSAFSKSARDSKTLFFNTRYKTKLS
KTLEFKPQFYVNKWQHFHPVTGIINDAKDNYVVGTDLMFDRKHQLFGHDASQVFGVTVRG
DIRNQGKKYQYRDTVIKFGRIVDVTSDAKGTLASVEDSSNLLSGAYFQQTFSPAERWQMD
LGVRYDHLNMDISGDEYWKYDYAGAKYVAGQGHYTTRANYDLFAPKASVNYELAKLSRLY
ATVSGAQQAPTESEISNNRSYGHATNLKASTAVQYEVGYKHNAQKLQTTFALYQIDLTDE
IVGVKDGTTTYYVNAGKTQKKGAELNVGYQVLPSVGIGGTAAVQDYRYLKYQDSGADYSG
NHVRFIPEQQYSIFANYQHKGYQARVEGMAFGSYYIDDANTEKYSGYNMVTNMMVAYRQK
AHLFQLNVNNLFDMRYAEEVSKDSRGSYSYTPGAPRNIQFNYRYQL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcttgggaggacaaaatatgcctaaattaaaaaaacttccccttggaatctgc
ctagccattctatccatgtcggctaaagcggagacttcattggatgcggttaccgtcacg
gcgactaagcaagaaagaaaagcgttggatgtttctcaaagtgttgacgtggtgaaaagt
gaaaccattcagaagaagaacgcacgaaacattaacgacatcatcaaaaccatgccgggt
gtaattgctgtcagcaaaaacggtggttatgactcgcgtttaattatccgtggtgccgga
ttgaaagcgccttatggtgtgcgtgaaatcatggtgttgcgcgatggtgtgccgatgact
gatccggacagttttacccgctttgattttgtcgatattgatgacatcagttcggtagaa
gtgttcaaaggccccggctctattgaggcgtctaatgccagtggcggcgtgttggcaatc
aactccatttccgtatttgatggcaccaaagactatgtgaagttgggcgcgggtagcgag
accagccgtaatgctgcgttgcacaaaacttgggaagccgggcaaaatgataatatctcc
atccagttgtcgcgccgccaagcggataataattggcgtcagtggaaccagttcgatacc
acgcagttctccataaaggaaggacatttcttcaagggtgagtcgacgcttgaaacggaa
ttgagctatcaggaatccaaccttcagctaccggggtcattgaacgcggcgggttatgca
aaatatctgcaaagtggtcaaacgttaaatgacaaagccaataccggatcggcgttttcc
aaaagcgctcgtgacagcaaaaccttgtttttcaatacgcgatataaaacgaaattaagt
aaaacgctggaattcaaaccacagttttatgtcaacaaatggcagcattttcacccagta
acgggcatcatcaacgatgcgaaagacaattatgtggtgggtacggatttgatgtttgac
cgtaagcatcaactgttcggtcacgacgcgagccaggtgtttggggtgacggtgagaggg
gatatccgtaaccaaggtaagaagtatcagtatcgtgacacggtcatcaagtttggcaga
attgttgatgtcacttctgatgcgaaagggacattggccagtgttgaagactcttccaac
ctgttgagtggtgcttacttccaacaaaccttctctcctgcggaacgctggcaaatggac
ttgggtgtgcgttatgaccacttgaatatggacatttccggtgatgagtactggaagtac
gattatgccggcgctaagtatgttgcggggcaaggtcattatacgacgcgtgcaaactat
gacttgtttgcgccaaaagcatcggtgaactatgagcttgcgaaactgtcgcgtttgtat
gcaacggtgagtggcgcacaacaagcaccaacggaaagcgagatcagcaacaaccgatct
tatggtcatgcgaccaatcttaaagcttcaaccgcagtgcaatatgaggtgggttataag
cacaatgctcagaagttgcagacaacttttgcgctttaccaaattgacctgacagatgaa
atcgttggcgtcaaagatggcactaccacttactatgtgaacgccggtaagacccagaaa
aaaggtgccgagttgaatgtcggttaccaagttttaccctcagtcggcattggtgggacg
gccgcggttcaggattatcgctatctgaaatatcaggactcgggtgccgattattcaggc
aaccatgtgcgattcattcctgagcagcagtattcgatttttgccaattatcagcataaa
gggtatcaagctcgcgtagagggcatggcgttcggtagttattacatcgatgatgccaac
actgagaaatacagtggttataacatggtgacgaatatgatggtcgcttaccgccagaag
gcgcatttgttccagctaaacgtcaacaatctgtttgatatgcgttatgcggaagaagtg
tctaaggatagtcgtggcagctacagctatacgccgggagcgccgcgcaatatccagttc
aactaccgttatcagctctag
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