Hyphomicrobium sp. MC1: HYPMC_0352
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Entry
HYPMC_0352 CDS
T01557
Symbol
uvrD
Name
(GenBank) DNA-dependent ATPase I and helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03420
Nucleotide excision repair
hmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYPMC_0352 (uvrD)
03430 Mismatch repair
HYPMC_0352 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_0352 (uvrD)
Enzymes [BR:
hmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPMC_0352 (uvrD)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYPMC_0352 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
HYPMC_0352 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
Tudor_1_RapA
AAA_11
DUF7251
Myosin_N
vATP-synt_AC39
AAA_22
DUF1344
Motif
Other DBs
NCBI-ProteinID:
CCB63586
UniProt:
F8J8L2
LinkDB
All DBs
Position
complement(346480..348930)
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AA seq
816 aa
AA seq
DB search
MTSIQKPDAAGGADLPHDDDDPPFDLPDAPAAKPHESGKSGMSISARAVAASRGQPTYLD
GLNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRIAHILATGRAYPSQLLAVTFTNKAAR
EMRERIGSLIGGTLEGMQWLGTFHSIGVKILRRHVELVDLKPGFTILDDDDQVRLLKQVI
EAAGIDKDRWPARQLASLIDGWKNRGLTPDKVPGGEAFSFAAGKGAQLYAAYQARLKDLN
ACDFGDLLLECIRLFRQHPDVLADYHRRFRYILVDEYQDTNVAQYLWLRLLAQGSPNICC
VGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIRLERNYRSTANILAAASGLIAKNKDRLG
KTLFTDGASGAKIKVANFWDDEAEARAIGDDIENLQRAHEPLNDMAVLVRASSQMRAIED
RFITLGLPYRVIGGPRFYERQEIKDAIAYLDVVANPANDLKFERIVNVPKRGLGDTTIKR
IHELARARSIPLYQAAREIIETDELTPKARKSLFDVTQSFERWRANLEHMRHTDLAELIL
DESGYTAMWQADKSPQSQTRLENLKELVRFMHDFDTLQGFLEHVSLVMDADQGNDGDRVS
LMTLHAAKGLEFGIVFLPGWEEGLFPHQRSLDESGKAGLEEERRLAYVGLTRAKRRAKIS
FAQNRRTHGLYQSALPSRFVDELPEATVEIVESEMPYGGRQNPFGFGGSFGTSRFDRAGG
AEPFKSSYNTPGWQRAQQSWSRSDQKQKKRSRGPLTLEGELVAASTAAAPSFKTGTRVRH
EKFGLGTVTHVDGNKLTIEFDDGSTKRVVASFVDVV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgattcaaaagccggacgctgccggcggcgcagatttgccgcacgatgacgac
gatccgccgttcgatttgcccgacgctcccgccgcgaaaccgcacgagagcggcaagagt
ggtatgtcgatttcggcgcgcgccgttgcggcgtctcgcggccagccgacgtatctggac
ggcctcaatccggagcagcgcgaagccgtcgaaacgaccgaaggcccgctcctggttctg
gccggcgccggaaccggcaaaacccgcgttctgacgacccgcatcgcccatattctggca
accggccgcgcctatccctcgcagctcctcgccgtcacgttcacgaacaaggccgcccgc
gaaatgcgcgagcgtattggctcgctgatcggcggcacgctggaaggcatgcagtggctc
ggcacgttccattcgatcggcgtcaagattctgcgccgtcacgtcgaactcgtcgatctg
aaacccggtttcacgatccttgacgacgacgatcaggttcgcctgctgaaacaggtgatc
gaggcagcaggtatcgacaaggaccgctggcccgcacgccagctcgcaagtctgatcgac
ggctggaagaaccgcggcctgacgcccgacaaagttccgggcggcgaagccttctccttc
gcggccggcaagggcgcgcaactctacgccgcctatcaggcgcgcctcaaagacctgaac
gcctgcgacttcggcgatctattgctcgaatgcatccgtctgttccgccagcaccccgac
gtgctcgccgattaccatcgccgcttccgctacatcctggttgacgaatatcaggacacc
aacgtcgcgcagtacctttggctcaggcttctcgcgcaaggatcgccgaacatctgctgc
gtcggcgacgacgatcagtcgatttacggctggcgcggcgccgaagtggataacatcctg
cgcttcgagaaagatttcccaggcgcgaaagtcatccgcctggagcgcaattaccgctcg
accgccaacattctcgccgccgcttccggcctgatcgctaagaacaaagaccgcctcggc
aagacgctcttcaccgacggcgcttcaggcgcgaagatcaaagtcgcaaacttctgggac
gacgaggccgaagcccgcgccatcggcgacgacatcgagaacctgcagcgcgcccacgaa
ccattgaacgatatggccgtgctcgtccgcgcctcgtctcagatgcgcgccatcgaagat
cgcttcatcacgctgggcctcccctatcgcgtcatcggcggccctcgcttctatgaacgc
caggaaatcaaggacgccatcgcctatctcgacgttgtcgccaatccagcgaacgacttg
aaattcgagcgcattgtcaacgtgccgaaacgcggcctcggcgatacgacgatcaagcgc
attcacgagctggctcgcgcccgctccattcctctatatcaagccgcgcgcgagatcatc
gaaaccgacgagctaacgccgaaagcccgaaaatctctattcgatgttacgcaatcgttc
gaacgctggcgcgccaatctggagcacatgcgccacaccgacctcgccgaactcatcctc
gatgaatcgggctacacggccatgtggcaggcggacaagagcccgcaatcgcagacgcgg
cttgaaaacttgaaagaactcgtgcgcttcatgcacgacttcgacacgctccagggcttc
ctcgaacatgtgtcgctcgtcatggacgccgaccagggaaacgatggcgaccgcgtctcc
ttgatgacgctgcatgccgccaaaggcttggagttcggcatcgttttcctgccggggtgg
gaggaagggctgtttccccatcagcgttcgctcgacgaaagcgggaaagccggcctcgaa
gaagaacgcaggctggcctatgtcgggctgacgcgcgccaagcgccgcgccaagatttcc
tttgcgcagaaccgccgcacgcacggtctctatcagtcggcactgccgtcgcgcttcgtt
gatgagctgcccgaagcgaccgtcgagattgtcgaaagcgagatgccctacggcggccgg
cagaacccgttcggcttcggcggctcgttcggcaccagccggtttgaccgcgcaggcggc
gccgaaccgttcaaatcgagctacaatacgcccggctggcaacgcgcccagcagtcctgg
agccggagcgatcagaaacaaaagaagcggtcacgcggcccgttgacgcttgaaggcgaa
ctcgtcgcagcgtcaaccgccgccgccccctcgttcaagactggcacgcgggtccgtcac
gaaaaattcgggctcgggaccgtcacccacgtcgacggtaacaaactgacgatcgagttc
gatgacggctcgaccaaacgggtcgtcgccagtttcgttgacgtcgtatga
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