Hyphomicrobium sp. MC1: HYPMC_0382
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Entry
HYPMC_0382 CDS
T01557
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hmc
Hyphomicrobium sp. MC1
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmc03016
]
HYPMC_0382
Enzymes [BR:
hmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HYPMC_0382
Transfer RNA biogenesis [BR:
hmc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HYPMC_0382
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CCB63616
UniProt:
F8J8N9
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All DBs
Position
complement(380936..381556)
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AA seq
206 aa
AA seq
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MTKSNIKIHHGDLPAGLSFPNGVAIDTETLGLNPHRDRLCLVQLSSGDGAAHLVKFDGRN
YDAPRLKALLTDPAIVKIFHFARFDIAVMKQYLGVETAPLYCTKIASKLARTYTDRHGLK
DLVGELLGIEISKQQQSSDWGAPELSESQMAYAANDVLHLHALKSKLDTMLAREGRAEFA
QSAFGFLPTRARLDLAGFEDDDIFAH
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccaacatcaaaattcatcacggcgatcttcctgccggattgtcgtttccc
aacggcgtcgccatcgacaccgaaacgctcggacttaatccgcatcgcgacaggctgtgc
ctcgtgcagctatcaagcggcgacggggcggcgcatctcgtcaagttcgacggcagaaac
tacgatgcgccgcgtttgaaggcgctgctgacggatccggcgatcgtgaaaatctttcat
ttcgcccgcttcgacatcgcggtgatgaagcaatatctgggcgtcgaaacggccccgctc
tactgcactaagatcgcctccaaactggcgcgcacttacaccgaccgccacggtctgaaa
gaccttgtcggcgagctgctcggaattgaaatctccaaacagcagcaaagcagcgactgg
ggcgcccccgaactgtcggaaagccagatggcctacgccgccaatgacgtgctgcacctt
catgcgctcaagtcgaagctcgacacgatgctcgcacgcgaaggccgcgccgagtttgcg
caatcagccttcggcttcctgccgacacgcgcccggctcgatcttgccggcttcgaggac
gacgacatattcgctcactaa
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