Hyphomicrobium sp. MC1: HYPMC_0869
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Entry
HYPMC_0869 CDS
T01557
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPMC_0869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmc03019
]
HYPMC_0869
Enzymes [BR:
hmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYPMC_0869
Messenger RNA biogenesis [BR:
hmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYPMC_0869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
CCB64102
LinkDB
All DBs
Position
complement(845744..847612)
Genome browser
AA seq
622 aa
AA seq
DB search
MTTETFEAFGFAEPLARALTQCGYTTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFLL
PLLNKFAANPSDPQWKQVSALILAPTRELAVQIDQEVAKLSRNMNLRRAVVLGGVSKGPQ
INALKRGVHILVATPGRLLDHVNMRSCDLSGVQTLVIDEADRMFDMGFVRDIKKIVSLIP
QKRRTALFSATMPDEIKKFAYDILHDPYRIDLSSKKIVVDRIDQKIMIVKTPEKQSRLHT
ILNDEAASRVIVFTRTKRGADRVASRLGMAGISSAAFHGNKAQNARQRALNDFTMGHIRV
LVATDIAARGIDVSNITHVINFDMPLDPETYVHRVGRTARKGTNGVAISLCDPSERQEVR
AIERMMKQPLDVVDDVGGEVLPPLPRNHQTNDGEGSRREGNRGGEHRHRDGAPRGERQAH
RGNRDRGRDRPAYQSEGREGRPERPAVFGVTDRERPARPERSERPAHHERPERPARADRQ
DRSDRQERSARPERQERPQRHRDDSRPRDRDQLNARSHGSNGHSANAERREHKPSDHHRP
KDHRGELRADHRGENGHDHRHGPRHVEGRHRNEANGGNREAGHGTKKPQRNGESGRSWGN
DGGAPKFMKRRDDDRNRARPAR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ttgaccactgaaacttttgaggcattcggctttgctgaacctcttgcgcgtgctctgacg
cagtgcggatacacgacgcccacaccgattcaggtgcaggcgcttccgccgcagctcgaa
ggccgcgacctgctcggcatggccgagacgggatcgggcaagaccgcaacattccttctg
ccgcttctgaacaagttcgcagcaaacccgtccgacccgcaatggaagcaggtctcggcg
ctgatccttgcgccaacgcgtgaacttgcggtccagatcgaccaggaagtcgccaagctc
tcgcgcaacatgaacctgcgccgcgccgtcgtcctcggtggcgtcagcaaaggaccgcag
atcaacgcgctgaaacggggcgttcacatccttgtggcgacgccgggccgcctgctcgac
cacgtcaatatgcgaagctgtgatctctccggcgtgcagacgctcgtcatcgacgaagcc
gaccgcatgttcgatatgggcttcgtccgcgacatcaagaagatcgtttcgctcatcccg
cagaagcgccgtaccgcgctcttctccgcgacgatgcccgatgagatcaagaagttcgcc
tacgatattcttcacgatccctatcgcatcgatctctcttcaaagaagatcgtcgtcgat
cgcatcgatcagaagatcatgatcgttaagacgcccgagaagcagagccgcttgcacacc
atcctgaacgacgaggccgcttcgcgcgtcatcgtcttcacgcgcacgaagcgcggtgcg
gatcgtgttgcaagccgcctcggcatggctggcatcagctcggcagccttccacggcaac
aaggcgcagaatgctcgtcaacgcgccctcaatgacttcacgatgggccacattcgtgtg
ctcgttgcgaccgacattgccgcgcgcggcatcgacgtttcgaacatcacgcatgtcatt
aacttcgacatgccgctcgatcccgagacgtacgttcatcgcgtcggccgtaccgcccgc
aaaggcaccaacggcgtcgccatttcgctgtgcgatccgtcggaacgccaggaagtccgc
gccatcgagcggatgatgaagcagccgctcgacgtcgtcgacgatgtcggtggcgaagtc
ctgccgccgctgccgcgcaatcatcagacgaacgacggtgaaggctcgcgccgtgaaggc
aatcgtggcggcgagcatcgtcatcgcgacggcgcaccgcgcggggaacgccaagcccat
cgcggcaatcgcgaccgcgggcgtgaccggcccgcctaccagagcgaaggccgtgaaggc
cgccccgaacgccccgcagtgttcggcgtcaccgatcgcgaacgcccagcgcgtccggaa
cgttcagagcgtcctgctcaccacgaacgtccggagcggcccgcacgcgccgatcgtcag
gatcgctcggatcgccaagagcgctcggctcgtccggaacgtcaagaacgcccgcagcgc
catcgggacgatagccgtccgcgtgaccgcgatcagctgaacgcacgttcgcatggcagc
aacggccattctgctaacgcagagcgtcgcgaacacaagccgagcgaccatcatcgcccg
aaagatcaccgcggcgaactccgcgccgatcaccgtggcgagaacggtcacgatcatcgc
cacggaccgcgccatgtcgaaggccgccaccgcaacgaagcgaatggtggcaatcgcgag
gccggtcacggaacgaaaaaaccgcaacgcaacggcgagagcggccggtcgtggggcaat
gacggcggcgcaccgaagttcatgaagcgccgcgacgacgatcgcaaccgcgcccgtccg
gcccgctga
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