Hyphomicrobium sp. MC1: HYPMC_0887
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Entry
HYPMC_0887 CDS
T01557
Name
(GenBank) putative ATPase
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
hmc
Hyphomicrobium sp. MC1
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_0887
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
HYPMC_0887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HerA_C
DUF87
FtsK_SpoIIIE
AAA_10
AAA_22
ResIII
AAA_30
T2SSE
DEAD
TrwB_AAD_bind
AAA_19
AAA_16
nSTAND3
AAA_7
Mg_chelatase
AAA_28
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CCB64120
UniProt:
F8JEW0
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All DBs
Position
860626..862065
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AA seq
479 aa
AA seq
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MTGKHGPEDSGEAVADPRDYVQDGLILIGVSKSGHEPAAECIELALANRHGLITGATGTG
KTVTLQVLAEGFSAAGVPVFASDIKGDLSGIAAKGTPAPKLVERAKEIGLTNYGNTSFPT
AFWDIFGKDGHPVRATVQEMGPLLLSRLMELTEPQEGVLNIAFRWAEDERAAGDAKMTIL
DLQDLRAVIDEMGKKASTLRSKYGHIAPATVGVIQRRLLVLEEQGADRFFGEPALDIMDF
LKVDADGRGVVNVLAAEKLMNTPRLYATFLLWLLTELFEKLPEVGDLEKPKLVFLFDEAH
LLFNDAPKAVLEQVERVSRLIRSKGVGVYYVTQSPSDVPDRVSAQLGNRIQHALRAFTPR
EQKAIRAAAETFRSNPSIDTERAIQELRVGEALVSLLRGKGEPSMVERTLIRPPMSRVGP
LTADERKKLIEADSDNVKKYAKGLDRESAHERLQDRSTMLGQLKHSAKKVFPGLFGGKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcaagcatgggcccgaggacagtggcgaagcggtcgccgatcctcgcgactat
gtccaagatggcttgatcctcattggtgtcagcaagtcaggccacgaaccggcggcggaa
tgtatcgagcttgcgctggccaaccggcatggtcttatcacaggcgcgactggtaccggc
aagaccgttacgcttcaggtgctggccgaaggcttctcagcggccggcgttccggttttt
gcttccgacatcaagggcgatctttcgggtatcgctgcaaagggtacgcctgcgccgaag
ctcgtcgagcgggcgaaagaaatcgggctgacgaactacggcaacacgtcgttcccgacg
gcgttctgggacatcttcggtaaagacggccatcccgttcgcgcgaccgtgcaggaaatg
ggaccgttgttgctctcgcgattgatggagctgaccgagccgcaggaaggcgtgctcaat
atcgcgttccgctgggcggaggacgaacgggcggccggtgacgcgaaaatgacgatcctc
gatctgcaggatctgcgcgcggtcatcgacgagatgggcaagaaagcctcgacgttgcgc
agtaaatacggacacatcgcgcccgcaacggtcggcgttatccagcgccgtctcctggtt
ctcgaagagcaaggcgccgaccggtttttcggtgagcctgcgctcgacatcatggatttt
ctgaaggtcgatgcggacggtcgcggcgtcgtcaacgtgcttgcggctgaaaagctgatg
aacacgccgcgcctttacgcgacgttcctgctttggctgttgaccgagcttttcgagaag
ctgccggaggtgggcgatctcgaaaagcccaagctcgtgttcctgttcgacgaagcgcat
ttactgttcaacgacgcgccgaaagcggtgctcgaacaggtcgaacgcgtgtcgcggctg
atccgttcgaaaggcgtcggcgtctattatgtgacgcagagcccgagcgacgttcccgat
cgcgtctcggcgcagctcggcaaccgaattcagcacgcgttgcgcgctttcacgccgagg
gagcagaaagcgatccgcgctgctgccgagacgttccggtccaatccgagcatcgatacc
gaacgcgccattcaggagcttcgtgtcggtgaagcgctggtctcgttactgcgcggcaag
ggcgaaccgtcgatggtcgagcggacgttgatccggccgccgatgtcgcgcgtcgggccg
ctcacggcagacgagaggaagaagctcatcgaagctgatagcgacaacgtcaagaaatac
gccaagggcctcgatcgcgaatcagcacacgagcgcttgcaggatcgcagcacgatgctg
ggacagctcaagcacagcgccaagaaagtctttcccggtctttttggcggtaaaggctga
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