Hyphomicrobium sp. MC1: HYPMC_1936
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Entry
HYPMC_1936 CDS
T01557
Symbol
mfd
Name
(GenBank) transcription repair coupling protein, ATP-dependent helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYPMC_1936 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_1936 (mfd)
Enzymes [BR:
hmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPMC_1936 (mfd)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HYPMC_1936 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
MFD_D3
Cas3-like_C_2
AAA_16
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCB65158
UniProt:
F8JCI2
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All DBs
Position
1846322..1849807
Genome browser
AA seq
1161 aa
AA seq
DB search
MTTDVQNSRAIFSGVPEGFDGRVIADVTKAARSGDLPGIHLHVARDDRRLDELQAAVAFF
APDVAIVPFPSWDTVPYDRTSPNPEIVSKRITALGKLAVGGRKKPTLVLTTVNSILQRVP
PRSFIRGAVKTIAPGQRLDPADLIRRLESYGYDRSSTVMEPGEYAQRGGIVDLYPPGRSL
PIRLDFFGDQLETIKAFDPETQRSQKPVPKFSLMPVSEVAFGEAATALFRTRYVALFGGN
TGDDPLYEAVSSGRRYVGQEHWLPLFHPNLETLFDYLPGVGISFDHLADEAVQRRFEQIR
EHYEARVDSLEGQRFGAPPYKPVPPDQMFLDGKDWKAALDARTVSRLTPFDDPGTTNVYQ
MHGKRGRTFAAERANPDANVFDAAVGHIRRVQGDNRRVILACWTPGARERLITLLEDHGL
KDTVKVDDFAGVQAMRPKETAFAVFGIEEGFETPDFAVIAEQDILGDRLVRQRRRAKKAA
DVLTEATSLSVGDLVVHSDHGIGRFHGLQTITALGAPHDCLELHYAGGDKLFLPVENIEL
LSRYGSDEGDAQLDRLGGVGWQTRKAKLKKRLREIANELIKIAAMRAMREAPVLIPPTGA
YDEFVARFPYEETEDQAASIDAVLADMASGKPMDRLVCGDVGFGKTEVAIRAAFTAAMNG
LQVAVVVPTTLLARQHYRTFAQRFQGLPVTIAQASRMVSAKDLAEVKAGLKSGNVDIVVG
THALLGKGIDFARLGLLIIDEEQHFGVNHKERLKKMREDVHVLTLSATPIPRTLQLALTG
VRELSLITTPPVDRLAVRTFISPFDPVILKEALRRERFRGGQTYYVAPRISDLDDIAEFL
REAVPDLAFARATGQMSPTELEDVMTAFYEGKYDILLSTAIVESGLDVPNANTLIVHRAD
MFGLAQLYQLRGRVGRSKTRAYAYITTPPDKKLTEGAEKRLKVLQSLDTLGAGFSLASHD
LDIRGAGNLLGEEQSGHIREVGFELYQSMLEEAVAAMKGGDLEADDKWSPEIQLGTSIMI
PESYVTDLQLRLGLYRRLSSFEKRSEIDAFAAELVDRFGPLPDEVGHLLDVMEIKGLCRT
AGIAKVDAGPKGAVITLYKGRFANPEGLISLVQNSRGLLKVQPDQRLVYRSDWDLPELRL
KGVRALVQQFADLAAKTKKAA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagacgttcaaaattcacgcgcaatcttttcaggcgttccggaaggcttcgac
ggccgcgtcatcgcggacgtgacgaaggccgcgcgctcgggcgatctgccgggcattcat
ctgcacgtggcgcgcgacgaccggcggctcgacgagctgcaggcggcggtggcgttcttc
gcgcccgacgttgcaatcgtgccgtttccgtcgtgggatacggtgccctacgaccgcacg
agccccaatccggagatcgtctcgaagcgcatcacggcgctcggcaagctcgcggttggg
ggccgcaaaaagccgacgctggtgctgacgaccgtcaattcgattttgcagcgtgtaccg
ccgcgcagcttcattcgcggcgcggtgaagacgattgcgccggggcagcggctcgatccg
gccgatctgatccggcggctggagtcctacggttacgaccgttcgagcacggtgatggag
cccggcgaatacgcgcaacgtggcggcatcgtcgatctttatccgccgggacgcagcctg
ccgatccggctcgatttcttcggcgaccagctggagaccatcaaggcgttcgatcccgag
acgcagcgctcgcagaagccggtgccgaaattctcgctgatgccggtcagcgaagtggcg
ttcggcgaagcggcgacggcgctgttccgcacgcgctacgtcgcgctgttcggcggcaac
acgggcgacgatccgctgtacgaagcggtcagcagcgggcgccgctatgtcggccaggag
cactggctgcccctgtttcatccgaacctcgagacgctgtttgattacctcccgggtgtc
ggcatcagtttcgatcatctggccgatgaagcggtgcagcggcgcttcgaacagatccgt
gagcactatgaagcgcgcgtcgactcgctcgaaggccagcgtttcggcgcgccgccgtac
aagccggtgccgcccgatcaaatgttcctcgacggcaaggactggaaggcggcgctcgat
gcgcgcaccgtttcgcgcctgacgccgttcgacgatccgggcacgacgaacgtctatcag
atgcacggcaagcgcgggcgcacgttcgcggccgagcgcgccaatccggacgcgaacgtc
ttcgatgcggcggtcgggcatatccggcgcgttcaaggcgacaaccggcgcgtcatcctt
gcatgctggacgccgggcgcgcgcgaacggctcatcactctgcttgaagatcatggcctg
aaggacaccgtgaaggtcgacgacttcgctggcgtgcaggcgatgcgccccaaggagacg
gcgttcgcggtgttcggcattgaggaaggcttcgagacgccggactttgccgtcatcgcc
gagcaggacattctgggcgaccggctcgtgcggcagcgccgccgggcgaaaaaggccgct
gacgttctcaccgaggcgacgagtctttcggtcggcgatctcgtcgtgcacagcgatcac
ggtatcggtcgctttcatgggttgcagacgatcaccgcgctcggcgcgccgcacgactgt
ctggaactgcattacgcgggtggcgacaagctgttcctgcccgtcgaaaacatcgagctg
ctgtcgcgctacggctcggacgagggtgacgcgcagctcgaccgtctcggcggcgtcggc
tggcagacacgcaaggccaaactcaaaaagcggctgcgcgagattgccaacgaacttatc
aagatcgcagcgatgcgggcaatgcgggaagcacccgtgctcattccgccgaccggcgct
tacgatgaattcgtcgcgcgctttccttacgaggagacggaagaccaggcggcgagcatc
gatgccgttcttgccgacatggcgtcaggaaagccgatggaccgccttgtttgcggcgac
gtcggtttcggcaaaacggaagtcgccattcgcgcggcgtttactgctgcaatgaacggt
ttgcaggttgcggtcgtggtgccgacgaccttgctggcgcggcagcactaccgcacattt
gcgcagcgctttcagggcttgccggtgacgatcgcgcaggcgtcgcgcatggtcagtgcg
aaggacctcgccgaggtgaaggcgggactgaagtcgggcaacgtcgacatcgttgtgggc
acgcatgcgctgcttggcaagggcatcgacttcgcacggctcggactactcatcatcgac
gaggagcagcacttcggcgtcaatcacaaggaacgcctaaagaagatgcgcgaggacgtg
cacgtgctgacgctgtcggcgacgccgatcccgcgcacgctgcaacttgcactgacgggc
gtgcgcgaactttcgctcatcacgacgccgccggtcgaccgcctcgcggtgcgcacgttt
atttcgccattcgatccggtgattttgaaggaagcgctcagacgcgaacgcttccgtggc
ggccaaacgtactacgtcgcgccgcgcatttctgatctcgacgacatcgcggaattcttg
cgtgaagcggtgcccgatctggcgtttgcgcgcgctacggggcagatgtcgccgaccgaa
ctcgaagacgtcatgacggcgttctatgagggcaaatacgacattctactttcgacggcg
atcgtcgagtccggtctcgacgtgccgaatgcgaatacgctgatcgtgcaccgcgccgat
atgttcggcttggcgcaactttaccagcttcgcggacgcgtcggccgttccaagacgcgc
gcttacgcgtacatcacgacgccgcccgataaaaagctgaccgagggcgcggagaagcgg
ctcaaggttctgcaatcgctcgatacgcttggcgcgggcttctcgctggcatcgcacgat
ctagatattcgcggcgcaggcaacctgctcggcgaagagcagtcgggtcatattcgcgag
gtcggcttcgagctctatcagtcgatgctcgaggaggcggtcgcggcgatgaagggcggc
gatctcgaagcggacgacaagtggagcccggagatccagctcggtacgtcgatcatgatt
ccggaaagttacgtcacggatctacaacttcgcctcggtctctatcggcgtttgtcgagt
ttcgaaaagcgctccgagatcgatgcgttcgcagcggaattggtcgatcgcttcggtccg
ctgccggacgaagtcggccatttgctcgacgtcatggagatcaaagggctttgccgtacg
gcgggaattgcgaaggtcgatgcgggtcccaagggcgccgtcatcacgctttacaagggg
cggtttgcgaaccccgaaggactcatctcgctcgtgcagaattcacgcgggcttctcaag
gtgcagcccgatcagcggctcgtctatcgctcggattgggacttgccagagctgcgtctc
aagggcgtgcgcgcgctggtgcagcagttcgccgacctcgccgcgaaaaccaaaaaggcg
gcttaa
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