Hyphomicrobium sp. MC1: HYPMC_2192
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Entry
HYPMC_2192 CDS
T01557
Symbol
lcfA
Name
(GenBank) Long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc00061
Fatty acid biosynthesis
hmc00071
Fatty acid degradation
hmc01100
Metabolic pathways
hmc01212
Fatty acid metabolism
hmc02024
Quorum sensing
hmc04146
Peroxisome
Module
hmc_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HYPMC_2192 (lcfA)
00071 Fatty acid degradation
HYPMC_2192 (lcfA)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HYPMC_2192 (lcfA)
09145 Cellular community - prokaryotes
02024 Quorum sensing
HYPMC_2192 (lcfA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hmc01004
]
HYPMC_2192 (lcfA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hmc04147
]
HYPMC_2192 (lcfA)
Enzymes [BR:
hmc01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HYPMC_2192 (lcfA)
Lipid biosynthesis proteins [BR:
hmc01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HYPMC_2192 (lcfA)
Exosome [BR:
hmc04147
]
Exosomal proteins
Exosomal proteins of breast milk
HYPMC_2192 (lcfA)
Exosomal proteins of breast cancer cells
HYPMC_2192 (lcfA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
CCB65414
UniProt:
F8JF59
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All DBs
Position
2065837..2067561
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AA seq
574 aa
AA seq
DB search
MTAEATSPVSQMSPRWVDHYPAGIDWRMPIPKGTVPGLLDEAAARYPQNPAIGFLGRSTS
YSDLAAEVDRVAAGLQRIGVKRGTKVGLFLPNTPTFIVYYFGILKAGGTVVNFNPLYTVE
ELTFQARDSETEIMVTHDLALLFTKIEALLQASVISRAVVVPFASVLSPLKSVLFRIFKR
KDIANVTRSPSAARVVDGLELAATRTPFSSVAIDPDNDIAVLQYTGGTTGTPKGAMLTHA
NIVANTKQVVAWGTVLKPGEECVLGALPLFHVFAMTVVMTVGIELAAKIVLIPRFQLIET
LKLINSEKPTMMPVVPTILTAMLNFEHIKSYNLSSLKFCLSGGAPLPLETKLKFEAMAAG
STKVVEGYGLSETSPVLTANPLDGEPVSGSIGMPLPGTMISLRSLDDPTKEVAQGERGEL
CAKGPQVMKGYWKRPEETAKQFVGDFLRTGDVAVMDENGYFAIVDRIKDLIICSGFNVYP
RRVEEAIYAHPAVEEVTVIGVPDPYRGEAPKAFVKLKAGMTATAPEMLEFLKAKISKIEM
PAAIEFRDSLPKTMIGKLSKKELTAEEAQRGKSA
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagaagccacctcacctgtgtcccagatgtcgccccggtgggtcgatcattac
ccggcaggcatcgattggcgcatgccaatccccaaggggaccgtgcccggactgctggac
gaggctgctgcccgctatccgcaaaaccccgctatcggctttctgggccgctccacgtcc
tattcggatctagcggccgaggtcgaccgtgtggctgccggcttgcaacggatcggagta
aaacggggcaccaaagtcgggctttttctgccaaataccccgacttttattgtgtattat
tttgggatactcaaagcgggtggaaccgtcgtcaacttcaatcctctttatactgtcgaa
gagctgacgttccaggccagggacagcgagacggagatcatggttacccatgatctggct
ctgctgttcaccaagatcgaggctttgctgcaggcgagcgtcatttcgcgcgccgtcgtc
gtgccgttcgccagcgtgctttcgccgctgaaatctgtgctgttccggattttcaagcgc
aaggacatcgccaacgtcacacgctcgccaagtgcggcgcgggtggtcgatggcctcgag
ctggccgcgacgcgaactccgttttcgtcggttgccatcgatcccgacaatgatatcgcc
gttctgcagtacaccggcggcacgaccggcacgcccaagggcgccatgctcacgcacgcc
aacatcgtcgccaatacgaagcaggtcgtggcctggggcacggtcctgaagcccggcgag
gagtgcgtgctgggcgccctgccgctgtttcacgtgttcgccatgacggtcgtcatgacg
gtcggcatcgagctggcagcgaaaatcgtgctcattccccgcttccagctgatcgagacg
ctgaagctgatcaacagcgaaaagccgacgatgatgccagtcgtgccgacgattctgacg
gcgatgctcaatttcgagcacatcaaatcgtacaatctttcgtcgctcaaattctgcctt
tcgggcggcgcaccgctgccgcttgagacgaaactcaaattcgaggcgatggcggccggc
tcgacaaaggtcgtggaaggctacgggctttccgagacgtcgccggtcctgacggccaat
ccgctggacggcgagccggtttcgggctccatcggcatgccgcttccaggcaccatgatt
tcgctgcgaagtctggatgacccgacgaaagaggttgcgcagggcgagcgcggcgaactt
tgcgccaaagggccgcaggtcatgaagggctactggaagcgcccggaggaaaccgcgaag
cagttcgtcggcgactttttgcgaaccggcgacgtcgcggtgatggacgagaacggctat
ttcgccatcgtcgaccgcatcaaggatctcatcatctgctcgggcttcaacgtttatccg
cggcgcgtggaggaggcgatttatgcgcacccggccgtcgaagaagtgaccgtcatcggc
gttcccgacccctaccgcggcgaagcgccgaaggcgttcgtcaaattgaaggccggtatg
acggcgacggcaccggagatgctcgaattcctgaaagccaaaatctcgaagatcgaaatg
ccagcggctattgagttccgcgacagcctgccgaagaccatgatcggcaagctgtccaag
aaagagttgaccgccgaggaagcccagcgcggcaaatcggcatga
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