Hyphomicrobium sp. MC1: HYPMC_2549
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Entry
HYPMC_2549 CDS
T01557
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYPMC_2549 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmc03021
]
HYPMC_2549 (rpoA)
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_2549 (rpoA)
Enzymes [BR:
hmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYPMC_2549 (rpoA)
Transcription machinery [BR:
hmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYPMC_2549 (rpoA)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYPMC_2549 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
IDH
Motif
Other DBs
NCBI-ProteinID:
CCB65766
UniProt:
F8JIF7
LinkDB
All DBs
Position
complement(2398126..2399148)
Genome browser
AA seq
340 aa
AA seq
DB search
MNVLQKNWQDLIKPSKLEIQTGRDRSRIATVVAEPLERGFGMTLGNALRRVLLSSLQGAA
IKTVQIDGVLHEFSSVPGVREDVTNIILNIKEIALRIHSEGVKRMVLKKEGAGPVTAGDI
EMSSEVEVLNPDHVICHLDQGAAIRMEFTADIGKGYVASDRNRPEDAPIGLIPVDSLYSP
VKKVSYKVENTREGQILDYDKLTMVVETDGSVRPEDAVALAARILQDQLAVFINFEEPKK
AQEEQRHPELAFNAALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR
KSLNEIKEVLATMGLHLGMEVPNWPPDNIDELAKRFEDQY
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgttctccagaagaactggcaagacctgatcaagccgtcgaagcttgaaattcag
accggccgcgatcgttcgcgcatcgcgaccgtcgtcgctgagccgcttgagcgcggcttc
ggcatgacgctcggcaacgcgctgcgccgcgtgctgctttcgtcgcttcagggcgctgcg
atcaagaccgtgcagattgatggcgtgctgcatgagttctcgtcggtccccggcgtccgc
gaagacgtgacgaacatcatcctgaacatcaaggaaattgcgctccgcatccattcggaa
ggcgtgaagcgcatggtgctcaagaaggaaggtgccggccccgtcaccgcaggcgacatc
gaaatgtcgtccgaagtcgaagtcctgaaccccgaccacgtgatctgccacctcgaccag
ggcgccgcgatccgcatggagttcaccgccgacatcggcaagggctacgtcgcgtctgac
cgcaaccgtccggaagatgcgccgatcggcctgatcccggtcgacagcctctattcgccg
gtcaagaaggtctcctacaaggttgagaacacccgcgaaggccagatcctcgactacgac
aagctgacgatggtcgttgaaaccgacggctcggtccgcccggaagatgccgtcgcgctt
gctgcccgcatcctgcaggaccagctcgcggtcttcatcaacttcgaagagccgaagaag
gcccaggaagagcagcgccatccggagctcgccttcaacgccgcgcttctcaagaaggtc
gacgagctcgagctttcggtccgctctgcgaactgcctgaagaacgacaacatcgtctac
atcggcgacctgatccagaagacggaagccgagatgctgcgcacgccgaacttcggccgc
aagtcgctcaacgagatcaaggaagtcctcgccacgatgggtctccatctcggcatggaa
gttccgaactggccgccggacaacatcgacgagctggcgaagcgtttcgaagaccagtac
taa
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