Hyphomicrobium sp. MC1: HYPMC_2877
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Entry
HYPMC_2877 CDS
T01557
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03030
DNA replication
hmc03430
Mismatch repair
hmc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPMC_2877 (dnaE)
03430 Mismatch repair
HYPMC_2877 (dnaE)
03440 Homologous recombination
HYPMC_2877 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hmc03032
]
HYPMC_2877 (dnaE)
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_2877 (dnaE)
Enzymes [BR:
hmc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYPMC_2877 (dnaE)
DNA replication proteins [BR:
hmc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYPMC_2877 (dnaE)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYPMC_2877 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
CCB66094
LinkDB
All DBs
Position
complement(2739619..2743164)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNAPIRPAPHAPKFIHLKVHSAYSLLEGALPITKLAKLATAMNLPAIGLTDTNNLFGALE
FSEKIWGAGVQPIVGTTLDIDFGDNRDNGPMALRAMSNEPRVKPAGKLALLAMNADGFAN
LMKLSKALNFEAAPDEPAHVKIARLEELSAGLIALTGGPQGPIDTALRNAQPDHAAERLA
TLEKIFGDRLYVEIQRHGLAEEVEVEPQLLELAYARRLPIVATNECYFAARADYEAHDAL
LCIADGRYVVEDDRRRASPEHYLKTEEEMASLFADLPEALANTVEIAIRCAFRPEGKKPI
LPRFVAGDDSQSEIENFRLEAAEMKRQAIEGLKRRLEAHGPSPGFTVEDYEKRLAYEVDV
ITQMKFPGYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERF
LNPERISMPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQM
PYGQVDRLCKLVPNNPANPVTLREAIDGEPKLQEERDSEPIVARLLEIAEKLEGLYRHAS
THAAGMVIGDRPLEELVPLYRDPKSNFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAV
QLIKRVRGITVDLPSLPLDDKPAYEMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIA
MVALYRPGPMDNIPTYINRKHGEEPVDYLHPMLEGILKETYGVIIYQEQVIQIAQVMGGY
TLGQADMLRRAMGKKDKAEMAKQQARFVEGAVSKGVKKEEAIYIFELVDKFAGYGFNKSH
AAAYALVSYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNNSG
VDFGVEPPSGDSKLGSIRYSLAALKNIGASAVETIVSERNSGGLYESLADFASRVDAKAL
NKRALETLAKGGAFDSLNSNRALVAANADTILASAQRRTADEAQGTTDLFGTAGKPADLV
LRATQSWTAMEKLSEEFQAIGFYLSGHPLDQYDRVLKKLGIKKFSEFEMLVQRGATAGRL
AGIVIAARERRSQKGNKFAFATFSDATGQFEAVIFSDTLATSRDLLEPGTPVIVSVEAER
DGETMKMRVQSIEELDKAASAVPRNLKLVLDRKSVVANAAPVSDVSKYLRPNARGGEIRI
VLPLEDRNREMEFILAGRYDVSPREAIRIEALPIVAEIIEI
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctccgattcgccccgctccgcacgcgcccaaattcattcacctgaaggtccat
tcggcttattcgctgctcgaaggcgcgttgccgattaccaagctcgccaagctcgcgacg
gcgatgaaccttcccgcgatcggcctcaccgatacgaacaatcttttcggcgcgcttgag
ttctccgagaaaatctggggcgccggtgtgcagcccatcgtcggcacgacgctcgatatt
gatttcggcgataaccgcgacaacggcccgatggcattgcgagccatgagcaacgagccg
cgcgtgaagcctgcgggcaagctcgcgctgctggccatgaacgccgacggctttgcgaac
ctcatgaagctgtcgaaggcactgaattttgaagcggcgccggacgagcctgcgcatgtg
aagatcgcgcggctcgaagaattgtccgccggattgatcgcgctgacaggtggtccgcaa
ggtccgatcgacaccgctttgcgcaacgctcagcccgatcacgccgccgagaggctcgcg
acgcttgagaagatattcggcgatcgcctctacgtcgaaattcagcggcacggtcttgcc
gaagaagtcgaagtcgagccacaactactcgaactcgcgtatgcgcggcgcttgccgatt
gtcgcgaccaacgaatgctatttcgccgcccgcgccgattacgaagcgcatgacgcgctg
ctgtgcatcgccgacggtcgctacgtggtcgaagacgatcgacgccgcgccagccccgag
cactatctcaagaccgaagaagagatggcgtctctgttcgcagatctccccgaagcgttg
gcgaatacagttgaaatcgccatccgctgcgcattccggcccgagggcaaaaagccgatc
cttccgcgtttcgttgcgggcgacgacagccagagcgaaatcgagaatttccgtctcgaa
gccgcggaaatgaaacggcaagccatcgaaggcttgaaacgtcgcctcgaagcgcacggg
ccatcgccaggcttcacggtcgaagactacgaaaagcgcctcgcttacgaggtcgacgtc
atcacgcagatgaagtttcccggctactttctcatcgtggccgacttcatcaaatggtcg
aaagccaacggcgtgccggtcggaccgggccgcggttcgggcgcgggttctctcgtcgct
tatgcgctgacgatcaccgatctggatccgttgcgcttcggcttgctgttcgagcgtttt
ctcaatcccgaacgtatttcgatgccggacttcgacgtcgacttctgccaggaaaagcgc
gaccgcgtcatcgactacgtgcagaagaaatacggcgacgaccgcgtcgcccagatcatc
acacacggtaagctgcaggcgcgcgccgtgctgcgcgacgttggccgcgtgctacagatg
ccgtatggccaggtcgatcggctctgcaagctcgtgccgaacaacccagccaatcccgtc
acgttgcgcgaagccatcgacggcgaaccgaaattgcaggaagagcgcgacagcgaaccg
atcgtcgcgcgcttactcgaaatcgccgaaaagctcgaaggcctttatcgccacgcctcg
acgcacgccgccggtatggttatcggcgaccgtccgctcgaagagttggtgccgctctac
cgcgatccgaaatcgaacttccccatcacgcaatacaactggaaaatggttgaagcggcg
ggtctcgtgaagttcgacttcttgggtctcaagacgctcaccgtgctcgaaaaagccgtg
cagttgatcaagcgcgtgcgcggcatcaccgtcgacttgccgagtttgccgctcgacgac
aagcccgcttatgaaatgctggccaaggccgatacggccggcgtgttccagcttgaaagt
acgggcatgcgcgaaagcttgaagcggctgaagcccgaccgcttcgaggacatcatcgcc
atggtggcgctctatcgccccggcccgatggataacatcccgacctacatcaaccgcaag
cacggcgaggagccggtcgactacctgcatccgatgctcgaaggtattctaaaagagacc
tacggcgtcatcatctaccaggagcaggtcattcagatcgcgcaggtgatgggcggctac
acgcttggtcaagccgacatgcttcgccgcgcgatgggtaaaaaagacaaggccgaaatg
gcgaagcagcaagcgcgcttcgtcgaaggcgctgtcagcaagggcgtgaaaaaagaagaa
gcgatctatatcttcgaactcgtcgataagttcgcaggctacggcttcaacaaatcgcac
gctgcagcgtatgcgctcgtcagctatcacacagcctatttgaaggcgaacttccgtgag
gaattcttcgccgcgtccatgacgctcgatatgggcaacacggataagctcgcgatgttt
gcgtccgaagcgcgcaaatccggtattcgcatgcttccgccgtgcgtaaacaattccggc
gtggatttcggcgttgaaccgccgtcgggagattccaagcttggttcgatccgttattcg
ctcgccgcattgaagaatatcggggcgagtgccgtcgagacgatcgtcagcgagcgaaac
tccggcggcctttatgaatcactcgccgacttcgcgtcgcgcgtcgacgccaaggcactg
aacaagcgcgctctcgaaacgctcgccaagggcggcgcgttcgactcgttgaattccaat
cgcgcactcgttgctgccaacgctgataccattctggcgtctgcgcagcgccgcaccgcc
gatgaagcgcagggcacgaccgatcttttcggcactgccgggaagcccgcagatctcgtt
ctgcgcgcgacgcagtcgtggaccgcgatggagaagctatcggaagagttccaagccatc
ggcttttatctctccggccatccgctcgatcagtacgatcgcgtattgaagaagcttggc
atcaagaaattcagtgagttcgaaatgctcgtgcagcgcggcgcgacggccggacgcctt
gccggcatcgtcatcgccgcccgcgagcgccgctcgcagaaaggcaacaaattcgccttt
gctacgttctccgacgcgacgggccaattcgaagcggtcatattttccgatacgctcgca
accagtcgcgatcttctggagccaggcacgccggtgatcgtttcagtcgaagccgaacgc
gatggcgagacgatgaaaatgcgcgtgcaatccattgaggaactcgacaaggctgcgtcg
gcagttccccgcaatctcaaacttgttctcgatcgaaagtcggtcgtggctaatgctgcg
ccggtttcggacgtcagcaaatatttacgcccgaatgcgcgtggcggcgaaattcgcatt
gtattgccgctcgaagatcgcaatcgcgaaatggaatttatcctcgcggggcggtacgac
gtttctcctcgcgaagcaattcgcattgaagcgctgccaattgtggcggaaataatcgaa
atctaa
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