Hyphomicrobium sp. MC1: HYPMC_2883
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Entry
HYPMC_2883 CDS
T01557
Name
(GenBank) putative hydrolase, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPMC_2883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmc03019
]
HYPMC_2883
Messenger RNA biogenesis [BR:
hmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYPMC_2883
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
CCB66100
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Position
complement(2747841..2749556)
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AA seq
571 aa
AA seq
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MSERPTSSPSSGKFNSDELVFMALGGLGEIGMNVYLYGFGPPRARSWLMVDLGVTFPHEG
EPGADVILPDLRFIVPERKNIAGLVLTHAHEDHIGAVIDLWPSLECPIFATPFTAGMLKT
KAGEFGGSVSLPIKEVPLGGRFKAGAFDIELVSLTHSIPEPNGLAIRTPAGLVFHTGDWK
LDPTPVVGRPHDAAKLQSLGDEGVLALVGDSTNAMREGRSASEEDVAKTLKKLIADAPRC
VAVTLFASNVARVASIAAAAQAAGRSLVVAGRALHRIIEVAIETGYLPPNFTYLDQQRFS
DLSRNKVVVLCTGSQGEPRAAIARIAEDEHPDISLDKGDLVIFSSRTIPGNERAVSRVQN
ALARLGTEIVTDAEALVHVTGHPRRDELRDMYSWLRPKIAVPMHGEARHLREHAKLARAC
GAEQTFTIVDGEILKLWPEPVSVIDEAPVGRLYRDGNLIVPDVEGPVKARRKLSFVGIAV
VAMALSRRGEILSEPGVVLEGIPAADRDGDSMREIVLDAIDGTLRSIPPKRRADHGMVQE
AVQRAVRSAINEAWGKKPVVKVLLSVVDGRG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacgtccgacgtcatccccatcctccggaaagtttaattcagacgaactcgta
ttcatggcgcttggcggtctcggtgagatcggcatgaacgtctatctgtacggcttcggt
ccaccgcgcgcgcgctcgtggctgatggtcgatctcggcgtgacgttcccgcacgagggc
gaacccggcgccgacgtcatattgcctgatctccgctttatcgtccctgaacggaagaat
atcgccggtctcgtgctgacccacgcgcacgaagatcacatcggcgccgtcatcgacctg
tggccttcgctggaatgcccaatcttcgcaacaccgttcacggcaggaatgctgaagacg
aaagccggcgagttcggcggctccgtttcgcttccgatcaaagaggtgccgctcggcggc
aggttcaaggcgggcgctttcgatatcgaactcgtaagcctcacgcattcgatccctgag
cccaacgggctcgcgatccggacgcctgcgggcctcgtattccataccggcgactggaag
ctcgatccgacgcccgtcgtcggccgtccacacgatgccgctaagctgcaatccctgggc
gatgaaggcgtgctcgcacttgtcggcgattccacgaatgctatgcgcgaagggcgctcg
gcctcggaagaggacgtcgccaaaacgctgaaaaagctgatcgccgatgcgccgcgctgt
gtcgccgtcacgctctttgcctcgaatgtcgcccgcgttgcttcgattgcggccgcggct
caagcagccgggcgctcgctggttgtcgcagggcgcgctttgcatcggatcatcgaagtt
gcgattgagaccggctacttgccgccgaacttcacgtatctggaccagcagcgcttttcg
gacctgtcgcgcaataaagtcgtcgtgctgtgtaccggcagccagggtgagccgcgcgcc
gccatcgcgcgtatcgccgaggacgagcatccggacatttcactggataagggcgatctc
gtcatcttctcgtcgcgcaccattccgggcaacgaacgcgccgtctcgcgcgtgcagaat
gctttggcgcgactcggtaccgaaatcgtcaccgacgccgaagcgctcgtgcacgtcacc
ggccatccccgtcgcgacgaactgagagatatgtattcctggcttcgcccgaagattgcc
gtcccgatgcacggcgaagcgcggcatctcagggaacacgccaagctcgcgcgcgcttgc
ggcgccgagcagacgtttaccattgttgatggcgaaatcctgaagctttggccggagccg
gtttctgtcatcgacgaggcgcctgtcggccggctctatcgcgacggcaatctcatcgtg
ccggacgtcgaagggccggtgaaggcgcgtcgcaagctatcgttcgttggcatcgccgtc
gttgcgatggcgttgtcccgccgtggcgaaattctgagtgaacccggcgtcgtgctcgaa
ggcattccggccgcggaccgagacggtgactcgatgcgcgagatcgtgctcgatgccatc
gatggcacgctccgctccattccgccaaagcggcgggctgaccacggcatggtccaggaa
gccgttcaaagggctgtgcgctcggccattaacgaagcctggggcaagaagcctgttgtc
aaagtgctcctctccgtggtggatggcaggggctga
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