Hyphomicrobium sp. MC1: HYPMC_2955
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Entry
HYPMC_2955 CDS
T01557
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease VII small subunit (exonuclease VII small subunit)
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HYPMC_2955 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_2955 (xseB)
Enzymes [BR:
hmc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
HYPMC_2955 (xseB)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HYPMC_2955 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
RL10P_insert
MTR4_beta-barrel
Motif
Other DBs
NCBI-ProteinID:
CCB66172
UniProt:
F8J9V5
LinkDB
All DBs
Position
complement(2819816..2820103)
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AA seq
95 aa
AA seq
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MTTTTKPAPAKSFADIKEMTFERALKELEVIVGKLERGDVELEESIEIYERGEALRDHCD
RLLKAAEAKVEKLTLGADGTPSGTAPLDKNGDAPF
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgacgaccaaaccggctccggcaaaaagctttgctgacatcaaggagatgacc
ttcgaacgcgccttgaaggagctggaggtcattgtcggcaagcttgaacgcggcgacgtc
gagcttgaagaaagcattgaaatttatgagcgcggcgaagcattgcgcgaccattgcgac
agactgctgaaagcggctgaagccaaagtcgaaaaactgacgcttggcgctgacggcacg
ccgtcaggcactgccccactcgacaagaacggcgatgcgccattttga
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