Hyphomicrobium sp. MC1: HYPMC_2996
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Entry
HYPMC_2996 CDS
T01557
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma-32 (sigma H) factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
hmc
Hyphomicrobium sp. MC1
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hmc03021
]
HYPMC_2996 (rpoH)
Transcription machinery [BR:
hmc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HYPMC_2996 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_11
HTH_3
Sigma70_r4_2
KORA
DUF3431
Motif
Other DBs
NCBI-ProteinID:
CCB66213
UniProt:
F8J9Z3
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All DBs
Position
complement(2862792..2863700)
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AA seq
302 aa
AA seq
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MASVAKGLPSLAGGSLGLSRYLEEIRKFPMLAPDEEFMLAKRWQEHQDADAAEKLVTSHL
RLVARIAMGYRGYGLPIGEVISEGNVGLMQAVKRFDPDKGFRLATYAMWWIRASIQEYIL
RSWSLVKMGTTAAQKKLFFNLRRAKSQLQALDDGDLKPEHVKTIATKLGVPEEDVVNMNR
RLGGDASLNAPIRAEAESGEWQDWLVDDTPTQEDRLVEDEELQRRKSYLSSAMSVLNDRE
RRVFEARRLAEEPATLEELSEEFGVSRERIRQIEVRAFEKVQKAVTSTARQAEAPAALEA
HR
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtagcaaaaggtcttccgtccctggccggcggttcactcggcctgtcgcgg
tatctggaagagatccgcaaattcccgatgctggcgcctgacgaggaattcatgctcgcc
aagcgttggcaggaacatcaggacgcggacgccgccgaaaaactcgtgacgtcgcatctc
cgcctcgtcgcgcgcatcgccatgggctatcgcggctacggtctgccgatcggcgaagtc
atatcggaaggcaacgtcggcctgatgcaggccgtcaagcgcttcgatccagataagggc
tttcgcctcgctacatatgcgatgtggtggatccgcgcgtccattcaagagtacatcctg
cggtcgtggagccttgtgaagatgggcaccacggcggcgcagaagaagctcttcttcaat
ctgcggcgcgccaagagccagctgcaggcgctggacgacggtgatctgaagcccgaacac
gtcaagacgattgcgacgaagctgggcgttccggaagaagacgtcgtcaatatgaaccgg
cggcttggcggtgacgcttcgctgaacgcgccgatccgtgccgaagctgagtccggcgaa
tggcaggattggctcgtcgacgatacgccgacacaggaagatcgcctcgtcgaggacgaa
gaattgcaacggcgcaagtcgtacctgtcgtccgcgatgtcggttctgaatgatcgcgag
cgtcgcgtcttcgaggcgcgccggcttgccgaagagcctgcaacgcttgaagaattgtcg
gaagagttcggcgtcagccgggaacgcatccggcagatcgaggtccgggccttcgagaag
gtccagaaggcggtgacgtcgacggctcggcaggcggaagcgcctgccgcccttgaggcc
caccgctaa
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