Hyphomicrobium sp. MC1: HYPMC_3807
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Entry
HYPMC_3807 CDS
T01557
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPMC_3807 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmc03019
]
HYPMC_3807 (recQ)
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_3807 (recQ)
Enzymes [BR:
hmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPMC_3807 (recQ)
Messenger RNA biogenesis [BR:
hmc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYPMC_3807 (recQ)
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYPMC_3807 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
HTH_40
ResIII
HemN_C
HTH_36
Motif
Other DBs
NCBI-ProteinID:
CCB67017
UniProt:
F8JB96
LinkDB
All DBs
Position
3641836..3644019
Genome browser
AA seq
727 aa
AA seq
DB search
MPARAAPLSLPLAPTTDSQMEAARATLENVFGYKGFRSHQSDIIRTMLGGGDCLALMPTG
GGKSLCYQIPALVRPGTGIVVSPLIALMQDQVDALRDLGVKAAFLNSTQDRATQDQIERQ
FAAGGLDLLYVAPERLVQERTLNLLERSDIAIFAIDEAHCVSQWGHDFRPEYRQLKILAQ
RFPNVPRVALTATADERTRQDIISELSLENAATFIASFDRPNIRYTIAELGSVSSRERLW
QFIESEHPTDAGIVYCLSRKSVEETAAWLSSKGRKALAYHAGLDAHLRAAAQSKFLTEDG
LIIVATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEAANAWMAYGFQDIVQ
LRQWINQSEGSDAFKKVQRQKLDALIGLAEMPGCRRQALLAYFGETRSEPCGNCDNCLNP
PHTEDGTVLAQKALSAVYRTEQRFGVTYLVDVLTGGVDERIIRNGHDRLSVYGIGKDVPQ
ATWKGLYRQLTALGYLSIDEEGVGSLVLTERSRPLLRGEERFLLRVTRQSAKSSKRSASA
SPKVARENQPLFDALRAMRQKLAASAKLPPYVVAQDKTLIELSEKRPTTESALHDIMGLG
ASKIARYGAAFLEVISQFKKHPALNNRLSATVNVTLAAHLRGLDAETIAADRGIEVSTVY
GHLAEAIEAGLVTADDALKLDPAERDEIEAAFERCQTRDTGKLGPAFAALDGQYDYGILK
CLLADSV
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccgcgccgcgccgctttcccttccgcttgcgccaaccacggacagccagatg
gaggccgctcgcgcgacccttgaaaatgtcttcggctacaagggtttccggtctcaccaa
agcgacatcatccggacgatgctcggcggtggcgattgcctggcgctgatgccgaccggc
ggcggcaagtcgctgtgctatcagatccctgccctcgtccgacccggcaccggcattgtc
gtctcaccgctcatcgccttgatgcaggatcaggtcgatgccctgcgcgatctcggggtg
aaggcggcgttcctcaactcgacgcaggatcgcgcaacccaagatcagatcgagcggcaa
ttcgcggccggtgggctcgacctgctctacgtcgctcccgaacggctcgtgcaggaacgc
acgctcaatctgctggaacgcagcgacatcgcgatttttgccatcgacgaggcacactgc
gtttcgcaatggggacacgacttccggccggagtaccggcagctaaaaatcctggcgcag
cgttttccgaacgtgccgcgtgtggcgctgacggcgacggcggacgagcgcacgcggcag
gacatcatctcagagttgtcgctcgaaaacgcggcaacattcatcgcaagcttcgaccgg
ccgaacattcgctacacgattgccgagctcggcagcgtcagctcgcgcgagcggctgtgg
cagttcatcgagagcgagcatccgacggacgcgggcatcgtctactgcctgtcgcgcaag
tcggtggaagagacggctgcgtggttgtcatcgaaggggcgcaaggcgctggcctatcac
gctggcctcgatgcgcacttgcgggcagcggcgcagtcgaaattcctgacggaagacggg
cttatcattgtcgccacgatcgcgttcggcatgggtatcgacaagccagacgtgcggttc
gtcgcgcatctcaatctgccgaagtcgatcgagtcctactatcaggagacgggccgtgcc
gggcgcgacggcgaagcggcgaacgcatggatggcctatggcttccaggatatcgtgcag
cttcggcaatggatcaatcaatccgaaggttcagacgccttcaagaaggtgcagcggcag
aagctcgacgcgctgatcgggctggcggaaatgccgggctgccgccgtcaagcattgctt
gcctatttcggcgagacgcgttcggagccgtgcgggaactgcgataactgtctcaatcct
ccccacaccgaagacggcacggtgttggcgcagaaggcgctctccgccgtctatcgcacc
gagcagcgtttcggcgttacctatctggttgacgttctgaccggcggcgtcgatgagcgg
atcattcgtaacggccatgaccgactttctgtttacggcatcggcaaggacgtgccgcag
gcgacgtggaaagggctttaccggcagctcacggcgctcggctatctttccatcgacgaa
gagggcgtcggttcgctcgtgctgaccgaacggtcacggcctttgctgcgcggcgaggag
cgtttccttttgcgcgtgacgcggcagagcgcgaaatcgtcgaagcgttcggcatcggcg
agccccaaagtcgcgcgcgaaaaccaaccgctgttcgacgcgctgcgcgcgatgcgccag
aaacttgcggcgtctgcgaagctgccgccttacgtggtcgcgcaggacaagacgctgatc
gagttatctgagaagcggccgacgacggaaagcgctctgcacgacatcatgggcctcggc
gccagcaagatcgcgcgctacggcgctgcgtttcttgaagtgatctcgcaattcaagaag
catccggcgttgaacaatcgcttatcggcgacggtcaacgtaacgctcgctgcacacttg
cgcgggctcgatgcagagacgatcgcggcggatcgcggcatcgaggtctcgacggtttac
ggtcatctggctgaagctatcgaagccggtctcgtcacggcggacgatgccttgaagctc
gatcccgcagagcgcgacgaaatcgaagcggcgtttgagcggtgtcagacgcgcgatacc
ggcaagctcggccccgcgttcgcggcgctcgacgggcagtacgattacggcatcctgaaa
tgcctgcttgccgatagcgtgtaa
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