Hyphomicrobium sp. MC1: HYPMC_3979
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Entry
HYPMC_3979 CDS
T01557
Name
(GenBank) putative two-component sigma-54 specific transcriptional regulator, Fis subfamily; with N-terminal response receiver, GAF and ATPase domains
KO
K02584
Nif-specific regulatory protein
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HYPMC_3979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hmc03000
]
HYPMC_3979
Transcription factors [BR:
hmc03000
]
Prokaryotic type
Helix-turn-helix
Other families
HYPMC_3979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
HTH_8
GAF_3
AAA_5
Mg_chelatase
AAA
AAA_2
HTH_28
AAA_16
HTH_1
HTH_23
HTH_30
Motif
Other DBs
NCBI-ProteinID:
CCB67188
UniProt:
F8J6F8
LinkDB
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Position
complement(3819756..3821459)
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AA seq
567 aa
AA seq
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MKRSIRDLSALDARAASSARAISRYERSGDAIESVMTASEKKSQRESSNFWRAQELYLIQ
EVANLIGKGLYFDQVARGVLHLLSEMLGLNRGRIVLKSPDEDIYRIAYYYGLTSAEAARG
RYALGEGVTGYVIQTGQLIIVQDIDKDPSFLGRAVERSKLPEGVVSFFACPIRVEDRTVG
ALACHRIRHRDRPLQDDVRILKILSAILGQFLTLNDRIDRRMRAIEARDAASAPAGDKAT
HYGIVGRSPALLRAISQIEQVADATASVLLLGESGTGKELFAHALHVAGPRKDKPFIKVN
CAAIPETLFESELFGHERGAFTGASEARMGWFEQANGGTIFLDEIGEMPLLMQTKLLRTL
QEGTVVRLGGKREIKVNMRVVAATNRDLAGAVESGDFREDLYYRLNVIPILLPSLAQRQS
DIPELVRHFLSRANVANKREVALTADAMHYLVEQPWPGNVRQLSNFIERLVLLASAPVLG
RVEVSALLTDRVFDISPPSERHQTRQPMSSVMPVRPYLPAASHGPDDLKRALEFSGGNKS
RAAQRLGLTERQFSYRLRKFKAEGTKF
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgctcgatccgcgatctttcggcactggacgcccgcgccgcatcgtcggcgcgg
gcgatttcgcgttatgaaaggtccggagatgcaatcgaaagcgttatgacggcgagcgag
aagaaatcacaacgcgagagcagcaatttctggcgggctcaggagctttatctgattcag
gaagtcgcgaacctgatcgggaaggggctctacttcgatcaggttgcgcgcggggtgctg
cacctgctttcggagatgcttgggctgaaccgcggccgcatcgtgctgaagtcgcctgac
gaagacatctaccgcatcgcttattactacgggttgacgtccgcagaagctgcgcgcggc
cgatatgcactcggcgaaggcgtcacgggttacgtcattcagaccggccaactcattatc
gtccaggatattgataaagacccaagctttcttggccgcgcggtcgaacgcagcaagttg
ccggaaggcgtcgtctcgttctttgcctgcccgatccgcgtcgaggaccgcaccgtcggt
gcgctcgcctgtcacaggatacgccatagggatcgtccgctgcaggacgatgttcgcatt
cttaaaattctctctgcgatcctcggtcaatttctaacgctcaacgatcgcattgatcgg
cggatgcgggccatcgaggcgcgcgatgcagcgtcggcaccggccggcgacaaggcaaca
cattacggcattgttggacgctcgccggcactgctgcgcgcgatctcgcagatcgagcag
gtcgcggacgccaccgcgagcgttttgctgcttggcgagtcaggaaccggaaaagagctt
ttcgcccacgcgctacacgtcgccgggccgcgaaaagacaagccgtttatcaaagtcaat
tgcgcagccattcccgaaacactgtttgaatcggagcttttcgggcacgagcgcggcgcc
tttaccggcgcgagcgaagcccgcatgggttggttcgagcaagccaacggcggcacgatc
tttctcgatgagatcggcgagatgccgctgctcatgcagactaagttgctgcgtacgctg
caagagggaacagtcgtccgcttgggcggtaagcgggagatcaaggtcaacatgcgcgtg
gtggcggccaccaatcgcgatcttgccggagcggtggagagcggcgactttcgcgaggac
ctttattaccgtcttaacgtcattcctattcttctaccgtcgctcgcgcagcgtcagtcc
gatattcccgaactcgtccgtcattttttgagccgcgcgaacgtcgcgaacaagcgggag
gtcgcgttgaccgccgacgcgatgcattatctcgtcgaacagccgtggccgggaaatgtc
cgtcaactgtcgaatttcatcgaacgtctcgttcttctcgcgagcgcaccagttctcgga
cgtgtcgaggtttccgccttgttgaccgatcgcgtcttcgatatcagtccgccgagcgag
cgccatcagacgcggcaaccgatgtcatccgtgatgcccgttcgcccctatcttccggct
gcgtcgcacggaccagacgatctgaaacgggcgctcgaattctccgggggtaacaaatcg
cgagccgcgcaacggctcggtttgacggagcgacagttctcgtatcggcttcgcaagttc
aaggccgaaggcacgaaattctaa
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