Hyphomicrobium sp. MC1: HYPMC_4149
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Entry
HYPMC_4149 CDS
T01557
Name
(GenBank) putative phage DNA polymerase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hmc
Hyphomicrobium sp. MC1
Pathway
hmc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYPMC_4149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmc03400
]
HYPMC_4149
Enzymes [BR:
hmc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HYPMC_4149
DNA repair and recombination proteins [BR:
hmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HYPMC_4149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CCB67358
UniProt:
F8J943
LinkDB
All DBs
Position
4004181..4005059
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AA seq
292 aa
AA seq
DB search
MTNSYDKDEMLALLDWFQAMGVDAAVGETAHDWLARGDEAPGAGFSWPERDAPEREKAAP
TARPAAPSQSARPGTARSAPGLDPSRPRAATPLGASEAETGARRIARAVTSLEGLEAALQ
AFDGCGLKSTATKLCFYRGAPQSDIMFIGEAPGRDEDLAGKPFVGRAGQLLDKMLAAIGL
SEADVHITNIVYWRPPGNRTPTPQEALSCRPFLERQIELVAPKMLVAVGGAAAKEVLGAT
EGIMRLRGRWREVQVGERKIPAIATLHPAYLLRTPAAKQLAWMDLLQIKSKL
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgacgaactcttacgataaagacgaaatgctggcgctgctcgattggtttcaagccatg
ggcgtcgatgcggccgttggcgaaacggcgcacgattggctggcgcgcggagatgaggcg
ccaggggccggtttttcctggccggaacgcgacgcgccggagcgcgaaaaagccgcgccg
accgcccgtccggcagcaccgtcacaatcggcgcgaccgggaaccgcgcgaagtgcgccg
gggctcgatccgagccgaccacgcgccgcgacgccgctcggcgccagcgaagccgaaacg
ggcgcccgccgcatcgcgcgcgccgtcacatcgcttgaagggctggaagcagcgctgcag
gctttcgacggctgcggcctcaaatcgacggcaacgaagctgtgcttctatcgcggcgcg
ccgcagtccgacattatgttcatcggcgaagcgccgggacgagacgaggatttggcgggc
aaaccgtttgtcggccgcgcggggcaactgctcgacaagatgcttgccgcaatcgggctg
tctgaagctgacgtgcacatcaccaatatcgtctattggcggccgcctggaaaccgcacg
ccgacgccacaggaagcgctgtcctgccggccttttctcgaacggcaaatcgagcttgtc
gcgccgaagatgctggtcgccgtgggcggcgcggcggcgaaggaagtgcttggcgcaacg
gaaggcatcatgcggcttcgaggcagatggcgcgaggtgcaagtcggggagcgtaaaatc
ccggctatcgccacgttgcatccggcgtatctactgcgaacacctgccgccaagcagctc
gcgtggatggatctgctacaaatcaagtcgaagctttag
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