Hyphomicrobium sp. MC1: HYPMC_4408
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Entry
HYPMC_4408 CDS
T01557
Name
(GenBank) conserved protein of unknown function; putative ATP-dependent RNA and DNA helicase (N-terminal) and conserved C-terminal DEAD/DEAH box domain protein (C-terminal)
KO
K17675
ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:
5.6.2.6
]
Organism
hmc
Hyphomicrobium sp. MC1
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
hmc03029
]
HYPMC_4408
Enzymes [BR:
hmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HYPMC_4408
Mitochondrial biogenesis [BR:
hmc03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
HYPMC_4408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEXQc_Suv3
Helicase_C
DEAD
DUF5131
Death_3
CBP66_1st
Motif
Other DBs
NCBI-ProteinID:
CCB67617
UniProt:
F8JC03
LinkDB
All DBs
Position
complement(4238486..4241701)
Genome browser
AA seq
1071 aa
AA seq
DB search
MASDLEARIRNVTAVLGPTNTGKTHLAIERMLGHESGMIGLPLRLLAREVYDRIKQRVGA
DKVALITGEEKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLCGDPERGHVFTDRLLHA
RGRSETLLLGAQTMRDAISDLIPGANFISRPRLSKLTYSGEKKITRLPARSAIVAFSAQE
VYALAELIRRQRGGAAVVLGALSPRTRNAQVALYQSGDVEFLVATDAIGMGLNLDVDHVA
FSALRKFDGYNHRNLTPGEIGQIAGRAGRHMNDGTFGVTGGAEALDADMVERLETHSFDS
IRTLQWRNRNLDFSTLDALHASLRELPREQRLTRARTADDVAALEALSSDREIADIASSR
PRVELLWEVCQLPDYRKISGQSHAELVSNFYRYLATGENRIPEDWFSKQVALADRTDGDI
DTLATRIAHIRTWTFVANRPDWLKDPAHWQERTRAIEDSLSDALHERLTQRFVDRRTSAL
MKGMRDKDELTADIADDGAITVENHFVGKLKGFRFTLDSAADGIHEKATRQAAMQVVTRE
LGMRARRVAAAQNDAFKLARNGMIIWRDDEIAKLEPAEDPLQPSVTLIADETMSESDREK
VQARIKTWVDDTIADKLKPLVEMSKSAELQGLARGIAFQLKEGLGALKRETVADDINALD
QAARAELRKYGLRFGAFNIFFPIMLKPAPADLAATLWLLKHPSENGVVPQLPRPGLTSVV
VDPATPEALYRAHGFHVCGPRAIRLDILERLADLIRPLLAWRSGPGKTDAPKGSTGDGGF
RATDDMMSILGCSAEELGEVLKALGFRLERRPIAVEAAPAASVAEPEAAPSAAEASTEPE
REVAATPAEVGAEALVETPPAAAEAPSVAEAVASADAGSDAAAATAPDASAVSAPASEEP
KFEEIWRPRRHQRPERRDGQRRDGQQRRDGGHGRHRHGNRHQQPQATVTGEGATAAPAAD
ASGAPQGGEQRSDRQHDRNRHSDRRDNRQRFEGRNNDDRRNDRRDEGGRPRRDDDRKGRR
DDGRRREDRRSPQVITAAPPKSAGGDASSPFAALAALKAQMEKRSEGSGST
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgatctggaagcccgcatccgaaacgtgacggcggtgctcggacccaccaat
accggtaagacgcacctcgccatcgagcggatgctgggccacgaaagtggcatgatcggc
ctgccgctgcgcctgctcgcgcgcgaggtctatgatcgcatcaagcagcgcgtgggcgcg
gacaaggtcgccctcattaccggtgaagaaaaaatcaagccggagcgcgcccgttattgg
gtgtcgaccgttgaagcgatgccgcgcgacatcgatgtcgatttcctggcgattgacgaa
atccagctttgcggcgatcccgagcgcggtcacgtcttcaccgaccggctgctgcatgcg
cgcggccgctccgagacgttgctgctcggtgcccagacgatgcgcgacgccatctcggat
ctcatccccggcgccaacttcatctcgcgcccgcgcctgtcgaagctgacctacagcggc
gaaaagaaaatcacccgcctgcctgcacgctcggcaatcgtcgcgttttcggctcaggaa
gtttatgcgctcgccgaattgatccgtcgccagcgcggcggtgcggctgtcgtgcttggt
gcgctctcaccgcgcacgcgcaatgcccaggtcgcgctttatcaatcaggcgatgttgaa
ttcctggttgcgaccgacgccatcggcatgggcctcaaccttgatgtagaccacgtggcg
ttctctgcgcttcgcaagttcgacggctacaatcatcgcaatctgacgccgggcgagatt
ggtcagatcgccggtcgtgccggccgccacatgaatgatggcacgtttggcgtcacgggc
ggcgccgaggcgctcgatgccgacatggtggaacgtctcgaaacccatagcttcgatagc
atccgcacgttgcaatggcgcaaccgcaatctcgatttctcgacgctcgatgcgctgcat
gcgtcgcttcgcgagctgccgcgcgagcagcgtctgacacgcgcccgcaccgccgacgat
gtggcagcactcgaagccttgtcctcggatcgcgaaatcgcggacatcgcctcttcacgc
ccgcgcgtcgagctactgtgggaagtctgccagcttcccgactatcgcaagatttccggt
caaagccacgccgagctcgtctcaaacttttaccggtatctggcgaccggcgaaaatcgc
atccccgaagactggttctccaagcaggttgctttggcggatcggacggatggtgatatc
gacacgctcgcgacccgcatcgcgcacattcgcacctggaccttcgtcgcaaatcgtccc
gattggctgaaggatccggcgcattggcaagagcggacgcgcgccattgaagatagtctc
tccgacgccttgcacgaacgtctgacgcagaggtttgtggatcgccggaccagcgctctg
atgaaaggcatgcgggacaaagacgaactgacggccgacatcgccgatgacggcgccatc
acggtcgaaaaccacttcgtgggcaagctgaagggtttccgcttcacgctcgattccgcc
gctgacggcattcacgagaaggcgacgcgccaggcggcgatgcaagtcgtgacgcgtgag
ctggggatgcgggcgcgtcgcgttgcggcggcgcagaacgatgcgttcaagctcgcgcgc
aacggcatgatcatctggcgcgacgacgagattgccaagctcgaacccgccgaagatccg
ctgcagccgtccgttacgctcattgccgacgagacgatgagcgagtccgatcgtgagaag
gttcaggcccgcatcaagacctgggtcgacgacacgattgccgataagctgaaaccgctc
gtcgaaatgtcgaaaagcgccgagcttcaaggcttggcgcgcggcatcgcttttcagttg
aaggaaggcctcggtgccctgaagcgcgagacggtcgccgacgacatcaacgcgctcgac
caggcggcgcgcgccgagttgcgtaagtacggcttgcggtttggcgctttcaacatcttc
ttcccgatcatgttgaagcctgctccagccgaccttgcggcgacgctgtggcttctgaag
catccgtccgaaaacggtgtcgtgccgcaattgccccggcccggcctgacgtcggtcgta
gtcgatcctgcgacgcccgaagcgctctatcgcgcgcacggcttccacgtctgcggcccg
cgcgccattcgtctcgatattcttgagcgtctggccgatttgatccgtccgctgctcgca
tggcgctccggtcccggcaagacggacgcccccaaaggctcgacgggcgatggcggtttc
cgtgccaccgacgacatgatgtcgatcctcggatgctcggccgaagagcttggtgaagtg
ttgaaagccctcggcttccgcctcgaacgccgcccgatcgcggttgaagctgcgcctgcg
gcttcagtcgccgagccggaagcagctccgtcggcagctgaagcttcgacggaacccgag
agggaagtcgccgcgaccccggcagaggtcggcgccgaagcgctagttgaaacgccgccg
gcagctgcggaggctccgtccgtggcggaagcagtcgcttccgcggatgcgggttccgat
gcagccgctgctactgctcccgatgcgtccgcggtgtcggctccggcgtcggaagaaccc
aagttcgaagagatctggcgcccacgccgtcatcagcgtcccgaacgccgtgatggacag
cgtcgcgacggacaacagcgccgcgacggtggtcacggacgacatcgccacggcaaccgt
catcaacagccgcaggcaaccgtcacaggcgaaggtgcaaccgccgcgcccgccgcagac
gcctcgggtgcgccgcagggcggcgagcaacgctccgaccgtcagcatgatcgcaaccgc
cactccgaccggcgcgataatcgccagcggttcgaaggccgcaacaacgacgaccgccgc
aatgatcgcagggatgagggtggccgccctcgtcgcgacgatgatcgtaagggacgccgt
gacgatggccgccgccgtgaagaccggcgttcaccgcaggtgatcacggccgcgccgcca
aagtcggctggtggcgatgcctcatcgccgttcgcggcgctggcggcgctcaaggctcaa
atggagaaacggagcgaaggctccggatcgacctga
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