Hyphomicrobium sp. MC1: HYPMC_4762
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Entry
HYPMC_4762 CDS
T01557
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hmc
Hyphomicrobium sp. MC1
Brite
KEGG Orthology (KO) [BR:
hmc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hmc03016
]
HYPMC_4762 (truB)
Enzymes [BR:
hmc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HYPMC_4762 (truB)
Transfer RNA biogenesis [BR:
hmc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HYPMC_4762 (truB)
Prokaryotic type
HYPMC_4762 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Phage_attach
Motif
Other DBs
NCBI-ProteinID:
CCB67970
UniProt:
F8JFK9
LinkDB
All DBs
Position
complement(4564524..4565444)
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AA seq
306 aa
AA seq
DB search
MARRKKGNAVHGWLILDKPINMTSTQAVGAVRRAFNAQKAGHSGTLDPLATGILPIALGE
ATKTVSFAVDGEKAYRFTVRWGAETETDDTEGAVSKTSDKRPERAEIEALLPRFHGEIMQ
VPPAYSAIKIDGNRAYDLARDGETVVLEPRPVVIESLKLVDMPDDATSVFEARCGKGTYV
RALARDLGRLMGCYGHVIALRRTEVGPFDEARAISMDTLLAAAQSEDPGEIAKLLLPVEA
ALADLPELLVSQSDAATLARGQTVIIRGRDAPIMTGPAYATSKGRLIALGELAKGALHPT
RVFNLG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacgcaaaaaaggcaacgccgttcacggctggctcattctcgacaagccgatc
aacatgacctcgacgcaggctgttggtgcggttcgccgcgccttcaacgcgcaaaaggcc
ggacactccggcacgctcgatccgctcgcaacaggcatcctcccgatcgcgctcggcgaa
gccacgaaaactgtatcgttcgcagtcgatggcgaaaaagcctatcgcttcaccgtgcgt
tggggcgctgaaactgagacagacgataccgaaggcgccgtctcgaaaacgagcgacaag
cgccccgagcgcgcggagatcgaagctctgctgccgcgctttcacggcgagatcatgcag
gtgccgcccgcctattcggcgatcaagattgatggcaatcgcgcctacgatctggcgcgc
gacggcgaaacggtcgtccttgaaccgcgcccggtcgtgatcgagagcctgaagctcgtc
gacatgccggatgacgcaacaagcgtattcgaagcccgctgcggcaagggcacctatgtc
cgcgccctggcccgtgatctcggacgactgatgggctgctatggccacgtcatcgcgctc
cggcgtaccgaagtcggccccttcgacgaagctcgcgccatcagcatggacacgctcctc
gcggccgcgcagtcggaagatccgggagagatcgccaagttgctgctgcccgttgaggcg
gccctcgccgatctccccgagctgctcgtctctcaaagcgacgccgccacgctcgcgcgc
ggccaaacagtcatcattcgcggccgtgacgcgccgatcatgaccggccccgcctacgcg
acctcgaagggtcgcctgatcgcgctcggcgagcttgccaagggcgcgctgcacccgaca
cgggtcttcaatctcggctaa
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