Vreelandella aquamarina SCSIO 43005: CTT34_04510
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Entry
CTT34_04510 CDS
T06424
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTT34_04510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmd03019
]
CTT34_04510
03009 Ribosome biogenesis [BR:
hmd03009
]
CTT34_04510
Enzymes [BR:
hmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTT34_04510
Messenger RNA biogenesis [BR:
hmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CTT34_04510
Ribosome biogenesis [BR:
hmd03009
]
Prokaryotic type
rRNA helicases
CTT34_04510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
QHD49006
UniProt:
A0A857GKB0
LinkDB
All DBs
Position
932882..934594
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLDMQRREPQVLVLAPTRELAQQVAVSFSKYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRVIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEALS
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERAPRDGAPGKPGGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDRAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctggctctattgcctgccgtt
ctgtctgctgttgaagcacagggctacgaaactccttcgcctattcaggcgcagacgatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaacc
gccgccttcgcactgccgctgctgtcgcgtctcgacatgcagcgtcgcgagccccaagta
ctggtactcgcaccgacccgcgaacttgctcagcaggtcgccgtctcttttagtaaatat
ggtcagaatcttcagggcttggaagtcgctaccctgtgtggcggtcaagagtaccgtgaa
cagctaggcgcgctgaagcgtggcgcgcaagtggtcgtcggcacgccgggccgtgtgatc
gatcacctggatcgtggcagcttgaagctggacggcctctcggcgctggtgctcgacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcaaacgcgtggttgccgatacc
ccgaaagatgctcagcgcgtgttcttctcggccacactgccgacggaaatcgagcgcatc
gtcaaccgttatctggtcaacccggtgaaggtcgcgattgaatcgcgtaccacgacgggc
gaaaacatcgaacagcgcatcgtgcgcgtggacggtggtgccaagctggaagcgttgtcg
cgtattcttgaagtcgagccggtcgatgccgcgatcgtcttcgtgcgcacccgtgcggcc
tgtaccacgctggtcgagcagttgaccgctcgtggcgtcaacgctgctggcctgtccggt
gacctggatcagagcctgcgcgagcgcaccattacccgcttgaagcgtgggaaagtcgac
gtgctgatcgcgaccgacgtagcggcccgtggcctcgacgttccgcgtatcacccacgtc
atcaactacgacctgccgcaggatgcagaagcctacacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggcattgcgatcactttcgcgggcttccgtgaaggccgcaaggtg
ggctggatggagcaggctaccggtcagaaaatgaccgaaatgccgctgcctgacgaagcc
gctattcgcgctcaccgtgacgacgtgttccatcaccgtgtagtggcggcactgaccaaa
ggtgctgaagagcagcgcgcactggtcgagcgtctggtggaagaggggcatgacgccgtt
gagctggcctgtgcgtttgccgccatggcccgtgccgacgaagcgccgatcggtcgtctt
caggcaccgcgcaaagagcgtgccccgcgcgatggcgcaccgggcaagccgggtggtgcc
cgtcgcgagcgctccagtgcgcccagcgaaggcatgacccgctaccgcgtctccgtgggc
cataaagacggcgtgaagccgggccaactggtcggtgcgctggcgaacgagggcggtatc
gaaggcgcgcgtatcggccgtatcgatatccgtaatgccttctccgtggtcgagctgccc
agcggtctgccttccaccatcctggcgaaaatggctcgtgcccgtgtggccggtcgcccg
ctggaaatcagcgaagaccgtgcgccggaacgcgcaccgcgccgtcgtcgtgacgatggc
gatgcgccggttcgccgtcgcgaacgtgcgtaa
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