Vreelandella aquamarina SCSIO 43005: CTT34_09540
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Entry
CTT34_09540 CDS
T06424
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTT34_09540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmd03400
]
CTT34_09540
DNA repair and recombination proteins [BR:
hmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTT34_09540
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CTT34_09540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
DUF87
UB2H
Kinesin
SWI2_SNF2
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
QHD49914
UniProt:
A0A857GMY6
LinkDB
All DBs
Position
complement(1991148..1993172)
Genome browser
AA seq
674 aa
AA seq
DB search
MSKEFRLQSKFQPAGDQPAAIRGLISGLESGLAHQTLLGVTGSGKTFTMANVVQQLQRPT
IVMAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIE
QMRLSATKALLERRDALIVVSVSAIYGLGDPDQYLKMRLHFTRGEMIDQRAFLRRLAELQ
YTRNDMDFRRGTYRVRGDVIDIFPADSDEEAVRVELFDDEIDSIRLFDPLTGDVRGQVPR
MTIYPKSHYVTPRDTILEAIDAIKAELKERLEWLRKHERLVEAQRLEQRTLYDIEMMLEL
GYCNGIENYSRYLSGRAPGEPPPTFFDYLPDDALLFIDESHVSVPQVGGMYKGDRSRKET
LVEYGFRLPSALDNRPMKFEEWEAISPQTIFVSATPGPYEAEHAGQIVEQVVRPTGLLDP
QIEVRPASSQVDDLLSEIGLRTAVGERVLVTTLTKRMAEDLTDYLDEHDIRVRYLHSDID
TVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGR
AARNANGKAILYGDRITDSMRKAIDETERRRAKQMAHNEKHGITPTTVTRSVADILEAAQ
TPGKKGNRRKGSERKVAEPEGGYDVASMGQQDLLAAISKLEDAMFEAAQNLEFEEAARLR
DQLHQMKEKQLALG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggaatttcgtctgcagtcaaaatttcagcctgcgggcgaccagcctgcagcc
attcgcgggttgatcagcggtttggaatcaggtcttgcccatcagacgctgcttggggtc
actggttcgggtaaaaccttcaccatggccaacgtggtacagcaactgcaacggcctacc
atcgtcatggcgcccaacaaaaccctggcggcgcagctgtatggtgaattcaaatcgttc
tttccggataacgcggtcgagtacttcgtttcctattacgactactaccagcctgaggcc
tacgttccctcgtcggatacgttcatcgagaaagatgcctcgatcaatgaccatatcgag
cagatgcgtctttccgccaccaaagcgctcttggaacgccgtgatgcgctgatcgtcgtc
tctgtatcggcgatctatggtttgggtgaccctgaccaatacctcaagatgcgtcttcac
ttcacacgtggagaaatgatcgaccagcgcgcgtttctgcgccggttggccgagcttcag
tatacccgtaatgatatggacttccgtcgcgggacttatcgcgtgcggggcgacgtcatt
gatatttttcctgcggattcggatgaagaggcggtgcgcgtcgagctgttcgacgacgaa
atcgactccattcgcttgttcgacccgctgaccggcgacgtacgtgggcaagtaccgcgc
atgacgatttacccgaagtctcactacgtgaccccccgtgacaccattttagaagccatc
gatgccatcaaagcagagctcaaagagcgcttggagtggctgcgtaagcacgagcggttg
gtagaggctcagcggctcgagcagcggacgctttacgatatcgaaatgatgctcgagttg
gggtactgcaacggtatcgaaaactactcgcgctatctctctggccgtgctcctggcgag
ccgccgcccacgtttttcgactacctgccggatgatgcgctgctgttcatcgacgagtca
cacgtgagcgtgccccaagtaggtgggatgtacaaaggcgaccgttcgcgcaaagagacg
ctagtagagtatgggtttcgtttgccgtccgcattggataaccgcccgatgaagttcgag
gagtgggaagcgatctcacctcaaacgattttcgtgtctgcgacgccaggaccttacgag
gccgagcacgctggccaaatcgtcgagcaggtggtgcggccaacggggctcttggatccg
cagatcgaagtacgaccggccagttcgcaggtagacgatctattgtcagagattgggttg
cgcacggcggtgggtgaacgggtgctggtgacgaccctgaccaagcggatggcagaagat
ctgaccgactacctcgatgagcatgatatccgagtgcgctacctgcactccgatatcgat
acggtcgagcgcgtcgagatcatccgagacctgcggctgggtaagttcgatgtgctggtg
ggaatcaacctgttgcgggaaggattggatattcccgaggtgtcgctggttgccattttg
gatgcagacaaagaagggttcctgcgcgccgaacgctcgctgatccaaaccattggccgt
gccgcgcgtaatgccaacggtaaggcgattctatacggtgatcgaatcaccgattccatg
cgcaaagcaatcgacgagaccgagcgccgtcgtgccaaacagatggcgcataacgaaaag
catggtattacgcccacgacggtcacacgctccgtggcggacattctcgaagcggcccaa
acgccgggtaagaaaggcaatcgccgtaagggaagtgagcgaaaagtggccgagccagag
ggcggatacgatgtggcgtccatgggccagcaggatcttctggctgccatcagcaaactc
gaagatgccatgttcgaagcggcgcaaaacctggaatttgaagaagccgcacggttacgt
gaccagcttcatcaaatgaaagaaaaacagctggcgctaggataa
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