Halomonas meridiana: CTT34_11250
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Entry
CTT34_11250 CDS
T06424
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hmd
Halomonas meridiana
Pathway
hmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTT34_11250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmd03019
]
CTT34_11250
03009 Ribosome biogenesis [BR:
hmd03009
]
CTT34_11250
Enzymes [BR:
hmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CTT34_11250
Messenger RNA biogenesis [BR:
hmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTT34_11250
Ribosome biogenesis [BR:
hmd03009
]
Prokaryotic type
rRNA processing factors
CTT34_11250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QHD50228
UniProt:
A0A857GLM0
LinkDB
All DBs
Position
2316306..2319716
Genome browser
AA seq
1136 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSSEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALA
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPSPDMDTPHY
DVQRLRDDHLDEDDSHSLSSFELSTDTDVGKEPDPSFAPPAQRAEAAVKSVVHNAPAPAS
LQTEEAPAKAAAPAPAAEQPSVLGRFIRGFAKLLGGDDSAHQTANEAEAPRKASEQPSRP
PRNERRSKPAQERNDSTPKQEQRSDNAKSDQRGNAAGNTGSRNEDASDKRSGPSRTRNRR
RHPQQDDSKGQENAKNTRQQSPKESVKESPKETSKEESGKPQEPRRDKPRENKPKQDKQD
KQEERAPAAQADDSQQDDGKPKRTRNNPRNRSRKQALNPQAEAEQLKLQADAAKAPQATD
DSASTAPADAAPSADASSQAAEAPQATATEAPTDAETMQREQAAQPAEASPEVSSGESSG
ESTEESTEESTTSERAANSGDKARKSTRQRRQSKPEADAKDAAVPVTPQAEPASTEAASP
AEPDDVTAARTPTADRQESRVEASATEAPKTDAPDTRVAEASDDQAQPADHATAPQSTDA
SQTPETTPAEAEASSTAPDQAHAEAAENNAQAAPVADVDTQSKAETAETAETAETAETAE
QDNVDTAPSAKPEDAPTSEATSPASERTAEKTPSDAVADEATSAMPPATEQEPAATATTE
QEPAATATTDEVSAPAPASVATDEEAPKPRRRRRRAHNDPRELRKQQNAQGQNSQE
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctaattaacgcgacccagcctgaagagctgcgggtcgcactggtagat
ggacagcgcctgtacgatttggatatcgagtccggcgctagggaacagaaaaaagccaat
atttatcggggtaagatcacccgcgtagagccctctctcgaagctgcgttcgtggacttt
ggcgctgaacgccatggcttccttcctttgaaagaaatttcccgcgaatacttcatcaag
gacgtgtctggtcgccctagcatcaaagaggtgctcaaagagggccaggaagtcatcgtt
caggtcgataaagaagagcgcggcaacaaaggcgcagcgctgaccaccttcatcagcctt
gcgggtcgctttttggtattgatgcctaataacccgcgtgcaggcggtatttcacgccgt
atcgaaggcgatgatcgcagccagctcaaagacgcgatgggtcagctaaccgttcctgac
aaaatggggctgatcgttcgtactgccggcatcggccgcagttccgaagagctgcagtgg
gacctggattacctcgtgcaggtgtgggaatccatcacgacggaagcaggcaaacgctcc
gctccgttcctgatctatcgcgaatccaacgtcatcattcgcgccatgcgtgactacttg
cgccaggatatcggcgaggtattgatcgatagtcccgagattcacgccgaagcgctggcg
ttcattcgccaggtcatgccctcgtaccagcagaagatcaagctgtacgcggatgaagtc
cccctcttctcccgcttccagatcgagtcacaaatcgaaaccgcctaccagcgggaagtg
aagctgccgtcgggtggttcgatcgtgatcgaccacaccgaagccctggtctccatcgac
atcaactctgcacgcgccacgcggggcagtgatatcgaggaaaccgcgctgcaaaccaac
tctgaggccgccgacgagatcgcccgtcagctgcgccttcgggatattggcggcttggtc
gtgatcgacttcatcgacatggggcctgcacgcaatcagcgtgaagtcgaaaaccgcatg
cgcgacgcgctgaagctagaccgcgcacgcgttcaaatcggacgcatttcacgcttcggc
ctgatggaaatgtcgcggcagcgcctgcgtccctccttgggcgaaaccagcggcgttgtg
tgcccgcgctgtaacggtcagggcaccattcgtgacgtgcgctcgctatcgctctccatc
atgcgcctgatcgaagaagaggccatgaaagagcgcagcgcccagattcgcgccatcctg
ccggtcccggtggccacgtatctgttgaacgaaaagcgcagcgtgctggcggatatcgag
tcgcgtcaaggcgttcgggtcgtcctgcttcccagccctgacatggacacgccccattac
gatgtccagcgcctgcgggatgatcatttagacgaagatgacagccactcgctctccagc
ttcgagctgtcgaccgacaccgacgtcggcaaagagccagacccaagctttgcgccgccg
gcgcagcgtgccgaagctgcagtgaagagcgtcgtgcataacgccccggcgcctgcatcg
ctgcaaaccgaagaagcgcctgctaaagccgctgccccagcgcccgccgccgaacagcct
agcgtgctcggccgcttcatccgtggctttgccaagctattgggcggtgatgacagcgct
caccagacggccaacgaggcggaagcgccacgtaaggcatccgagcagccaagccgcccg
ccccgcaacgagcgacgcagcaaaccggctcaggagcgtaacgacagcacgcccaagcag
gaacagcgcagcgataacgccaagagcgatcagcgcggcaacgcggcggggaacaccgga
tcacgtaacgaagatgccagcgacaagcgcagcggcccaagccgtacgcgtaatcgccgc
cgccacccccaacaagacgatagcaaaggccaagagaacgcgaaaaacacgcgtcaacag
agccctaaagagagcgtaaaagagagcccgaaagagacctccaaggaggagtctggtaaa
cctcaggagcctcgtcgcgacaagccacgggagaacaaacccaagcaggacaagcaggac
aagcaggaggagcgcgcacctgcagcgcaggccgacgacagccagcaggatgacggcaag
ccgaagcgcacccgcaacaacccgcgcaaccgctcgcgtaaacaggcgctcaacccgcag
gccgaagccgagcagttgaagctgcaagcggacgctgcaaaggcgccccaagccactgat
gactccgccagcacagcccccgcagatgcggctcctagcgctgatgcctcctcccaggca
gccgaagcccctcaggccacggccaccgaggcgccgactgacgccgagacgatgcaacgc
gaacaggccgcccaacctgcggaagcgagtcctgaagtgagctctggagaaagcagtgga
gaaagcactgaagagagcactgaagagagcactacctcagagcgtgcagccaacagtggc
gacaaagctcgcaaatcgacgcgccagcgccgtcaatccaagccggaagccgacgctaaa
gacgcagcggtaccggtcacgccgcaggccgagcccgcctccacggaagcagctagccct
gcggagcctgacgacgttactgcagcgcgcacgcccaccgctgataggcaggaatcgcgt
gtagaggcgtcagcaacagaggcacccaaaaccgacgcgcccgatacacgcgttgccgaa
gcaagcgatgaccaggcccagccagccgatcatgccacagcgccgcagtccacggatgcg
tctcaaacgcccgagaccaccccggcagaggccgaggcaagcagcactgcgcctgaccaa
gcacacgccgaagcagcggaaaacaacgcacaggcagcgccggtagcagacgtcgacacc
cagtccaaagcggaaacggcggaaacggcggaaacggcggaaacggcggaaacggcggag
caagataacgttgacacagcgccctctgcaaagcctgaagacgcaccgacctccgaggct
acctctccagcaagcgaacgaactgccgagaagacgcccagcgatgccgtcgccgacgaa
gcgacatccgcgatgccccctgcgaccgagcaggagcctgcggccactgctacgaccgag
caggagcctgcggccactgctacgaccgacgaggtgtctgcgccagcgcctgctagcgtt
gccaccgacgaggaagcgcctaaaccgcgccgtcgtcgccgtcgtgcccataacgatccg
cgtgagctgcgcaagcagcagaacgctcaaggccaaaactcgcaagagtaa
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