Vreelandella aquamarina SCSIO 43005: CTT34_12315
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Entry
CTT34_12315 CDS
T06424
Name
(GenBank) RNA pyrophosphohydrolase
KO
K08311
putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTT34_12315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmd03019
]
CTT34_12315
Messenger RNA biogenesis [BR:
hmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CTT34_12315
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX
NUDIX_4
Nudt16-like
Motif
Other DBs
NCBI-ProteinID:
QHD51583
UniProt:
A0A857GQF3
LinkDB
All DBs
Position
complement(2558735..2559229)
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AA seq
164 aa
AA seq
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MIDADGFRPNVGIIIANSQGQLLWARRVGQNAWQFPQGGIKASETPQQALFRELHEEIGL
TADDVDIVACTRGWLRYRLPRRMIRTHSRPVCIGQKQKWFLLKIRCQENRICMTATPKPE
FDGWRWVSYWYPLGQVVPFKREVYRRALRELSPRVQRLAQDDEG
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgctgacggctttcgccccaatgttggcatcatcattgccaatagccagggg
cagctgctttgggcgcgtcgtgtagggcaaaatgcgtggcagtttccccagggaggcatc
aaagcaagcgagactccacaacaagcgctttttcgtgaacttcacgaagagatcggctta
accgccgacgatgttgatattgtcgcctgcacccggggctggctgcgctaccgtctgcca
cgacgcatgattcgtacccactcacggccggtctgtatcggccagaagcagaagtggttt
ttactcaaaattcgttgccaagaaaaccggatctgtatgacggccacgcccaagccggaa
ttcgacggttggcgatgggtgagctactggtacccgcttgggcaagtagtgccgttcaaa
cgcgaggtttatcggcgcgcactcagggagctttctccgcgcgtgcagcgcttggcacaa
gatgacgaaggataa
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