Vreelandella aquamarina SCSIO 43005: CTT34_12765
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Entry
CTT34_12765 CDS
T06424
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTT34_12765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hmd03019
]
CTT34_12765
03016 Transfer RNA biogenesis [BR:
hmd03016
]
CTT34_12765
Enzymes [BR:
hmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CTT34_12765
Messenger RNA biogenesis [BR:
hmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CTT34_12765
Transfer RNA biogenesis [BR:
hmd03016
]
Prokaryotic type
tRNA degradation factors
CTT34_12765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QHD50495
UniProt:
A0A857GMR4
LinkDB
All DBs
Position
complement(2661824..2664208)
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AA seq
794 aa
AA seq
DB search
MKYWTLSDDPHAEREAQKYDNPAPSREYLLAALESYGKPITHENMSRMLGIEDEDHLEAV
RRRMAAMERDGQVLRDRRGAYALIDKLDLIKGKVLGHRDGFGFVLRDDGKKPDLVLPPRQ
MRRVFHGDHVLVRISGRDRRGRDEATIADVIARNTQTIVGVYRSNTPEFGVLIPENPRIT
QEVIIPHTSCGGAKDGQVISARIVQQPATRVQPVGEVIEVLGERMDPGMEIDIAIRSYDI
PAEFPPEVLDQTSDISAEVLEEDKQHRVDLRDIPLVTIDDESAKDFDDAVCAWKTKSGSW
KLLVAIADVSHYVRPGTALDDEARTRGNSVYFPGQVVPMLPELLSNGLCSLNPHVDRLVM
VCEMNISKTGAISRYSFYEAVMNSHARLTYNKVAAMLDGESEEGEALRREHAELVKPLKN
LHELYGLLRSAREERGAIDFDTTETAIIFNDERKIEKIVPRTRNDAHKLIEECMLAANVA
TARFLDKHDLPALYRIHERPTPERLDKLRLFLSELGLSVGGGDEPTPQDYQALREAIADR
PDADIIQTVMLRSMNQAVYSPQNEGHFGLAYQAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTNTVVRVEGAPVEPPSKWCPYTFEQMLELGEHCSMTERRADEATRDVESWLKCEFMSD
KLGETFEGTIASVTQFGLFVRLDDFYVEGLVHVTSLPSDYYHYEAEKHRLKGERTGTTYR
LGDGLTVQVARVDMDDRKIDFGLADDKPRPRRQPRKRRGESGGPKAVAAQDKPSTRRGPR
RTRNGSRKPSAKKG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgaagtactggacgttgagtgatgatccgcacgccgagcgcgaggcgcaaaagtacgat
aaccctgcgcctagccgcgaatacttattggctgccctagaaagttatggcaagcccatt
acccatgaaaacatgagccgcatgctgggcatcgaggatgaagaccatctcgaagccgtg
cgtcggcgcatggcggccatggaacgcgacgggcaggtgctacgggaccgtcgtggcgcc
tacgcgctcatcgacaagctcgacctaatcaaaggtaaggtcttggggcatcgcgatggt
tttggtttcgtgctgcgggatgacggtaagaagccagatctcgtgttgccgccacgtcaa
atgcgtcgtgtctttcacggtgatcacgtgctggtacgcatcagtggccgtgaccgtcgc
ggccgtgacgaagccaccattgccgatgtcatcgcgcgcaatacccaaaccatcgtgggt
gtctaccgcagcaataccccggagtttggggtgttgattcccgaaaacccgcgcattacg
caagaagtcatcataccgcacacctcctgtgggggggcaaaggatggccaggtcatttcg
gccaggatcgtgcagcagcccgctactcgggtgcagccggtgggtgaagtgatcgaagtg
ctgggcgagcgtatggatcccggcatggagatcgatattgccatccgcagctacgacatc
cctgccgagtttccgccagaggtgctggatcaaaccagcgacatctctgcagaggtcttg
gaggaggataaacagcatcgcgtcgatttgcgtgatattccgctcgtcaccatcgacgat
gagtccgccaaagatttcgacgacgcagtctgtgcctggaagaccaagtccggcagctgg
aagctgttggtggcgattgccgacgtttcccactatgtacgccccggcactgcgctggat
gatgaggcgcgcacgcgagggaactcggtctacttcccggggcaggtcgtgccgatgctg
ccagagctgctctccaacggcctctgttcactgaaccctcacgtcgatcgtttggtgatg
gtgtgcgagatgaacatctccaaaaccggcgccatcagtcgctactcgttttatgaagcc
gtgatgaactcccatgcacgcctgacctataacaaggtggcggcgatgttggacggcgag
agcgaggagggcgaagcgctgcgtcgtgagcatgcggaactggtcaagccgctcaaaaat
ctgcacgagctgtatggcctactgcgctctgcgcgggaagagcgtggcgcgatcgatttc
gataccacggaaacggcgatcatcttcaatgacgagcgcaagatcgaaaaaatcgtgccg
cgtacccgtaacgacgctcacaagctcatcgaggagtgcatgctggccgccaacgtggcc
acggcgcgcttcctggacaagcacgacctgccagcgctctaccgtattcacgagcgtccc
acgcccgagcgtttggacaagctgcgcctgttcttgagtgagctgggactttccgtcgga
gggggcgacgagcccacgccgcaagattaccaagcgcttcgcgaagccattgccgaccga
ccggacgccgatatcattcaaacggtcatgctgcgctcgatgaatcaggccgtctattcg
cctcagaacgaaggccactttggtttggcgtaccaggcgtacgcccactttacctcgccg
atccgccgttatccggatctgctggttcaccgcgccattcgctcggtgattcgtggcccg
cgtcaaaccaatacggtcgtgcgggtagagggtgcgccggtagagccaccgagcaaatgg
tgcccctataccttcgaacaaatgctggagctgggcgagcactgctcgatgaccgagcgg
cgtgcggatgaagcgacccgcgatgtcgagagctggctcaagtgtgagttcatgtccgat
aagctcggagagactttcgaaggtacgattgcctcggtgacccagtttggcctgttcgtg
cgtctcgatgacttctatgtcgagggcttggtacacgtgacctcgctgccgtcggactac
tatcactacgaagccgaaaagcatcgcctgaaaggggagcgtaccggcaccacctaccgc
ctgggggatggcttgaccgttcaggtggcgcgcgtggacatggacgaccggaaaatcgac
tttggcttggccgatgacaagccgcgcccgcgtcgccagccgcgtaagcgtcgtggtgaa
agtggtggccccaaggcagtcgctgcccaggataagccgtcaacgcgtcgtggcccgcgc
cgcacgcgcaacggctcgcgcaaaccatcagcgaaaaaggggtga
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