Vreelandella aquamarina SCSIO 43005: CTT34_13015
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Entry
CTT34_13015 CDS
T06424
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hmd
Vreelandella aquamarina SCSIO 43005
Pathway
hmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CTT34_13015 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hmd03400
]
CTT34_13015 (recD)
Enzymes [BR:
hmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CTT34_13015 (recD)
DNA repair and recombination proteins [BR:
hmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CTT34_13015 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
Helicase_RecD
SH3_13
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_28
NTPase_1
nSTAND3
NACHT
HerA_C
Mg_chelatase
T2SSE
AAA_5
Motif
Other DBs
NCBI-ProteinID:
QHD50539
UniProt:
A0A857GMP8
LinkDB
All DBs
Position
2718562..2720817
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AA seq
751 aa
AA seq
DB search
MSRQHDTHTFDMFGEAASAHPALSSTPELLALCERWVARGWLRDLDRALVRFLASEAPNA
PTLLLLAAALASHQLGRGHVCLDINATLNAPDFALSLPPEGDDLTDPPPLPSDVLATLTL
SEWQAALHHPLLTSEGPGNTPLVVVTTHSANGTPNTRLYLRRYWQYEQSLHQHIAARLEA
TDTESKGTEGQSGRPIHWATGDASHPGLLPQALNILFKQSNGLDWQKTACALAAGSRFGI
ITGGPGTGKTTTVVRLLALLQTQQLAQHPSQPLRIRLAAPTGKAAARLNESIAGQVDALP
LAELATLLSEHSPAATASEIAIPTEVTTLHRLLGARPDTRHFRHSAANPLALDVLVIDEA
SMVDIEMMAATLSALPAHAQCILLGDKDQLASVEAGSVLGDLCRRADAAHYTPATADWLA
QATGQPLPEDFIDPAGQPLDQAITMLRVSHRFNEHSGIGQLAKAINQPGHAQSEREKQQA
VSAVLRHGYSDIHHLVMNDDTALDKLVIHGSPSGFAGNGEGRTDREGQPIAPPTGYRHYL
NVLHAQRPRGESFEENQTAFDAWASEVLSAYSHFQLLCALRKGPWGVEGLNQRIASTLRR
EKLLYGSDYTLEKGWFEGRPVLVTQNDYGLKLMNGDIGITLAVPDPRNPQQKLLRIAFPT
SDTDKPIRWVLPSRLHAVETVFAMTVHKSQGSEFLHTALLLPPTLNPILTRELVYTGITR
AREWLTVVEAKRGVLNEAVVREVVRVSGVGG
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccagcacgatactcacaccttcgatatgttcggcgaagccgccagcgcccac
ccggcactcagcagcaccccggaactgctggccctgtgcgaacgttgggtagcgcgaggc
tggcttcgggatttagaccgcgccctggtgcgctttttagccagtgaagccccaaacgcc
cccacgctgctgctactggcggcagcacttgccagccaccagctaggccgcggccacgta
tgcctggatattaacgccacgctcaacgcgccggatttcgccctttcgctaccccccgaa
ggggacgacctcaccgacccgccgccgctacccagcgacgtgctggccacgctcacgctc
agcgaatggcaagccgccctgcaccacccgctgctcaccagcgaaggccccggcaacaca
ccgctggtcgtagtgaccactcactcagccaacggcacccccaacacgcggctctacctg
cgccgctactggcagtacgagcaaagcctgcaccaacacatcgccgcacgcttggaagca
accgacacagaaagcaagggcacagaaggccaaagtgggaggccaattcattgggcgacg
ggtgacgccagtcaccctgggttactcccccaagccctgaacatcctgttcaaacaaagc
aacggcctagactggcaaaaaaccgcctgcgccctggccgccggcagccgtttcggcatc
attaccggaggccccggcaccggtaaaaccaccaccgtggtacgcctgctcgccctgctg
caaacccagcaactggcccagcaccccagccagccgctgcgcatccgcctagccgccccc
accggcaaagccgccgcccgcttgaacgaatctattgcggggcaggtggatgcgttaccg
ctcgctgagttggcaacgctactcagtgaacactcacctgcggcaacagccagcgagatc
gcgattcccacagaagtcaccaccctccaccgcctactcggcgcacgccccgacacccgc
cacttccgccatagcgccgccaacccgctggcgctggacgtactggtgatcgacgaagcc
tcgatggtggatatcgaaatgatggccgcgaccctcagcgccctgcctgcccacgcccag
tgcattctgctgggggataaagaccagctcgcctcggtagaggcaggctcggtactcggc
gacctatgccgccgcgccgatgccgcccactacaccccggccaccgccgactggctagcc
caggccaccggccagccgctgcctgaggatttcatcgaccccgcaggccaaccgctcgac
caagccattaccatgctgcgggttagccaccgcttcaatgaacacagcggcatcggccaa
ctggccaaagccatcaaccagccgggccatgcccaaagcgaacgggaaaaacagcaggcg
gtaagcgccgtgctgcgccacggctactcggatattcaccatttggtgatgaatgacgac
accgcgctggataagctggtgattcacggcagccccagcggttttgcaggcaacggcgaa
ggccgcaccgaccgcgaaggccagcccatcgccccgcccaccggctaccgccactacctc
aacgtgctgcacgcccagcgcccacggggagaatccttcgaggagaaccaaaccgctttt
gacgcctgggccagcgaggtactcagcgcctacagccacttccagctgctgtgcgcactg
cgcaaaggcccctggggcgtagaaggcttaaaccagcgcatcgccagcacattgcgccgc
gaaaagctgctgtacggcagcgactacacgctagagaaaggctggtttgagggccgcccg
gtattggttacccaaaacgactacggcctgaaactaatgaacggcgatatcggcatcacc
ctggccgtgcccgacccgcgcaacccacagcagaagttattaagaatcgccttccccact
agcgacaccgacaaacccatccgctgggtgctgccttcccgcctgcacgcagtagaaacc
gtgtttgcgatgacggtccacaaatcccaaggctcggagtttttgcacaccgccctactg
ctaccgcccacgctgaaccccatcctgacccgcgagctggtatacacaggcattacccgc
gcccgcgaatggcttacggtggtggaagccaagcgcggggtgttgaacgaggcagtggtt
agggaggttgttagggttagtggggttgggggttaa
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