Haloferax mediterranei: HFX_0039
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Entry
HFX_0039 CDS
T02129
Symbol
rad3B
Name
(GenBank) DNA repair helicase-like protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hme
Haloferax mediterranei
Pathway
hme03022
Basal transcription factors
hme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HFX_0039 (rad3B)
09124 Replication and repair
03420 Nucleotide excision repair
HFX_0039 (rad3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hme03021
]
HFX_0039 (rad3B)
03036 Chromosome and associated proteins [BR:
hme03036
]
HFX_0039 (rad3B)
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_0039 (rad3B)
Enzymes [BR:
hme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HFX_0039 (rad3B)
Transcription machinery [BR:
hme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HFX_0039 (rad3B)
Chromosome and associated proteins [BR:
hme03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HFX_0039 (rad3B)
DNA repair and recombination proteins [BR:
hme03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HFX_0039 (rad3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
nSTAND3
TrwB_AAD_bind
AAA_25
AAA_22
AAA_16
T2SSE
SecA_DEAD
Sigma54_activat
PhoH
AAA_34
AAA_7
Asparaginase_C
Motif
Other DBs
NCBI-ProteinID:
AFK17783
UniProt:
I3R0M3
LinkDB
All DBs
Position
complement(40653..42857)
Genome browser
AA seq
734 aa
AA seq
DB search
MAHANGSPDDSDTERAWRFFPYDEPYPNQEAAMSGIADALDEERNVLLEGATGTGKTISA
LVPALSYAREHDKTVVITTNVHQQMRQFVEDARAITRQEAIRAVVFRGKSSMCHIDVGFQ
ECQTLRDTTRSIVEKESDKSELSEQAQTLLDQMREGESGAADARSAVTDELDTIDDELEQ
LKEGNYCDHYYNNLTQNTDEFFQWLFDDVRTPDEIFEYAGRQNLCGYELLKEGMEGIDLV
VCNYHHLLDPMIREQFFRWLDRDPEDIITVFDEAHNIEGAARDHASRSLTENTLESAMNE
LEDVDDSRAESARNVIGTFLESLRDGYEEAFGFGEREQVGENWYDLSIASQGRRDDLTMD
FLQSYEGRGIDIEVELALQLGKRLDEQYEDEYKNGDATTRQECQTLQAANFIADWMEMGG
DLGRHPMLSVRRDGGTDEIYGRAELYTCIPREVTRELFEEVHASILMSATLRPFDVTEST
LGLDDPVTMAYGLEYPEDNRRTFSVSLPALFSSERDDPGTQETIEQLLADAARFTPGNTL
VFFPSYSEAERYHERLRGNPAVDIDLYLDEPGVRAEEMRREFVGKDSAVLLTSLWGTLAE
GVSFDGDDARTVVVVGVPYPHLSERLEAVQDAYDRVYRGKKDAGWRYAVEIPTIRKTRQA
LGRVIRAPNDYGVRILADKRYTRESSSMGKYGVRGSFPVEERAEMVDIAPGKLKFAMLNF
YNDHDAYDGEPPRP
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
gtggcccacgccaacggctcacccgacgacagcgacacggagagagcgtggcgtttcttc
ccgtacgacgagccgtatccgaaccaggaggcggcgatgtccggtatcgcggacgctctc
gacgaggagcgaaacgtcctcctcgaaggggcgacggggaccgggaaaaccatctccgcg
ctcgttcccgcgctgtcgtacgcccgcgagcacgacaagacggtcgtcatcacgacgaac
gtccaccagcagatgcggcagttcgtcgaggacgcccgcgccatcaccagacaagaagct
atccgggcggtggtcttccgcggcaaatcctcgatgtgccacatcgacgtgggctttcag
gagtgccagacgctccgcgacaccacccgaagcatcgtcgaaaaggaatccgacaagtcc
gaactctccgaacaggcccagacgctcctcgaccagatgcgcgagggcgaatccggcgcg
gcggacgcgagaagcgccgtcacggacgaactcgacaccatcgacgacgagttagagcag
ttgaaggagggcaactactgcgaccactactacaataatctcacgcagaacacagacgag
ttcttccagtggttgttcgacgacgtgcgaactcccgacgagattttcgagtacgccggc
cgccaaaacctctgcggctacgagttgctgaaagagggcatggagggaatcgacctcgtc
gtctgtaactaccaccacctgctcgacccgatgatacgcgagcagttcttccggtggtta
gaccgcgaccccgaagacatcatcaccgtcttcgacgaggcgcacaacatcgagggggcc
gcccgcgaccacgccagtcgctcactcaccgaaaacaccctcgaaagcgccatgaacgag
ttggaagacgtggacgattcccgtgccgagagcgcccgcaacgtcatcgggacgttcctc
gaatcgctccgcgatggctacgaagaggcgttcggcttcggcgagcgcgagcaggtcggc
gaaaactggtacgacctctcgattgccagtcagggccgccgcgacgacctgacgatggac
ttcctccagtcgtacgagggccgcggcatcgacatcgaagtcgaactcgccttgcagttg
ggcaagcgactggacgaacagtacgaagacgagtacaaaaacggcgacgcgacgacgcgt
caagagtgtcaaaccttgcaggcggcgaacttcatcgccgattggatggagatgggcggc
gacctcggtcgacacccgatgctctcggttcgccgcgacggcggaaccgacgaaatctac
ggtcgtgccgaactctacacctgcatcccgcgagaggtcacccgcgaactgttcgaagag
gttcacgcgagcattctgatgtcggcgacgctccgcccgttcgacgtgaccgaatcgacg
ctcggcctcgacgacccggtgacgatggcctacggactcgaatatccggaggacaaccgt
cggaccttctcggtctcacttcccgcgttgttctcgtcggagcgcgacgacccgggcacg
caggagactatcgagcagttgctcgccgacgccgctcggttcacgccgggaaacacgctc
gtgttcttcccctcgtattcggaggccgagcgctaccacgagcgtctccgcggaaacccc
gctgtcgatatcgacctctatctggacgaaccgggcgttcgagccgaagagatgcgacgc
gagttcgtcggcaaagacagcgcagtgcttctcacgtcgctgtggggaacgctcgccgaa
ggcgtgagtttcgacggcgacgacgcgcgaaccgtcgtggtcgtcggcgttccgtacccg
catctctccgagcgcttggaagcggtgcaagacgcctacgaccgcgtctaccggggcaag
aaggatgctggctggcgctatgcggtcgagattccgacgattcgaaagaccagacaggcc
ctcggtcgcgtgattcgcgcgcccaacgactacggtgtgcgcatcctcgccgacaagcgc
tacacgcgagagagctcgtcgatggggaaatacggcgtccgcgggtcgttccccgtcgaa
gagcgggccgagatggtcgacatcgcgccgggaaaactcaagttcgcgatgctgaacttc
tacaacgaccacgacgcctacgatggcgagccgccgcggccgtga
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