Haloferax mediterranei: HFX_0084
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Entry
HFX_0084 CDS
T02129
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hme
Haloferax mediterranei
Pathway
hme03410
Base excision repair
hme03430
Mismatch repair
hme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HFX_0084 (recJ)
03430 Mismatch repair
HFX_0084 (recJ)
03440 Homologous recombination
HFX_0084 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_0084 (recJ)
DNA repair and recombination proteins [BR:
hme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HFX_0084 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HFX_0084 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HFX_0084 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
DUF6003
Motif
Other DBs
NCBI-ProteinID:
AFK17826
UniProt:
I3R0R6
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All DBs
Position
complement(88760..90178)
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AA seq
472 aa
AA seq
DB search
MDGPVPELTEHAAACADRLRDADRVLLASHIDADGLTSAGIASAALERAGIPFETVFCRQ
LDEAAVADIAATDYDTVLFTDFGSGQLDIIVEYEDAGDFHPVIADHHQPADGVETEHHLN
PLRFGLDGATELSGAGASYVLARALEPAGGDNRDLAALAVVGAVGDMQDSNGELHGANTG
IVDEGVEAGVVEEGTDLRIYGRQTRALPKLLQYATDVRIPGISNNEAGAIEFLTELDVPC
RDDDGEWKRWVDLTGDERQTLASALMRRAIASGVPASRIDDLVGTTYVLSREKEGTELRD
VSEFSTLLNATARYDRADVGLAVCLGERDRALDRARRLLRNHRKNLSNGLQWVKEQGVSV
EENLQWFDAGDEIRETIVGIVAGMAVGTNATRNGIPVLAFAENEDGDVKVSSRGSYVMVR
NGLDLSAVMREASRAVGGDGGGHDVAAGATIPKGEVAAFIAEADRIVGEQLG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggacggacccgtccccgaactcaccgagcacgcagcggcgtgtgcggaccgactccgc
gacgccgaccgggtgcttctcgcctcgcacatcgacgccgacgggttgacgagcgctggc
atcgcctcggcggcactcgaacgcgccggaatcccgttcgagacggtgttttgtcgccaa
ctcgacgaggcggccgtcgccgatatcgccgccactgactacgacaccgttctcttcacc
gacttcggcagtggccaactcgatatcatcgtcgagtacgaggacgcgggcgacttccac
ccggtcatcgccgaccaccaccaacccgccgacggcgtcgagaccgaacaccacctgaac
ccgcttcggttcggactcgacggcgcgaccgaactctccggagcaggcgcgagttacgtc
ctcgctcgcgcgctcgaaccggcgggcggagacaatcgagacctcgcggctctcgcggtc
gtcggggcggtgggcgacatgcaggactcgaacggcgaactccacggagccaacacgggc
atcgtcgacgagggcgtcgaagccggcgtcgtcgaggaagggaccgacctccgcatttac
ggtcgccagacccgtgccctcccaaagctgctccagtacgcgaccgacgttcgcatcccc
ggcatctcgaacaacgaagccggcgctatcgagttcctgaccgaactcgacgttccgtgc
cgtgacgacgacggcgagtggaaacggtgggtcgacctcaccggcgacgagcgacagacg
ctcgccagcgcactgatgcgccgcgccatcgccagcggcgttcccgcctcgcgcatcgac
gacctcgtagggacgacctacgtactctcccgcgagaaagaaggaaccgaacttcgcgac
gtgagcgagttttcgacgctcctgaacgcgacggcgcgctacgaccgggcggacgtgggt
ctcgcagtctgtctcggcgagcgcgaccgcgcactcgatagggcgcgcaggctccttcga
aatcaccgcaaaaacctctcgaacgggcttcaatgggtgaaagaacagggcgtgagtgtg
gaagagaacctccagtggttcgacgcgggcgacgagatacgcgagaccatcgtcggcatc
gtcgcggggatggccgttggtaccaacgcgacgcgaaacggaattccggtgttggccttc
gccgagaacgaagacggcgacgtgaaggtctcctcgcgcgggtcgtacgtgatggtcaga
aacggtctcgacctctctgctgtcatgcgcgaggcatcccgtgcagtcggcggcgacggt
ggcggtcacgacgttgccgcgggcgcgacgattccgaagggtgaagtggcggcgtttatc
gccgaagccgaccgcatcgtcggcgagcagttagggtaa
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