Haloferax mediterranei: HFX_0550
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Entry
HFX_0550 CDS
T02129
Symbol
xthA
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
hme
Haloferax mediterranei
Pathway
hme03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HFX_0550 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hme03400
]
HFX_0550 (xthA)
Enzymes [BR:
hme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
HFX_0550 (xthA)
DNA repair and recombination proteins [BR:
hme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HFX_0550 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
AFK18277
UniProt:
I3R217
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All DBs
Position
517197..518039
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AA seq
280 aa
AA seq
DB search
MRVGAHVSIAGGVDNAVGNQVDVGGNCGQIFTHSPQVWQDPNIGDEESDAFREGTVESLA
GPWVIHTSYLVNLCTPKDGLREKSLDSMQKEVDAAAKLDIPYVNVHLGAHTGAGEQQGLE
NAVSVLDEIDVPDSVTILIESDAGSGTKMGGDFAHLGYVLGESEQDLDICLDTAHAFAAG
YDLSTAEGVAETFEELDAEVGLEHLKCVHLNDSKHECGTNKDEHAHIGKGLIGEEGMRAF
INHDAIVDNDVPLVLETPTENGKSYEWNIERVREFRADKN
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcgagttggagcacacgtttctatcgccggtggcgtcgacaatgcggtcggaaaccaa
gtcgacgtcggcgggaactgcggtcagatattcacccactctccacaggtgtggcaggac
cccaacatcggcgacgaggagtccgacgccttccgcgagggaacagttgagtcgcttgcg
ggtccgtgggtcatccacacgtcgtacctcgtcaacctctgtacgccgaaagacggcctg
cgcgagaaatcactcgactccatgcagaaggaagtcgacgccgcggccaaactcgacatt
ccctacgtgaacgtccacctcggtgcccacaccggcgcgggtgaacagcagggcctcgaa
aacgccgtctccgttctcgacgaaatcgacgtccctgacagtgtcaccatcctcatcgag
tccgacgccgggtcgggcacgaagatgggtggcgacttcgcccacctcggatacgtcctc
ggagagtccgaacaggacctggatatttgcctcgacactgcccacgcatttgccgcgggc
tacgacctttcgacggccgagggtgtcgccgagacgttcgaagaactcgacgccgaagtc
ggactggagcacctcaagtgcgtccacctgaacgactcgaaacacgagtgcggcaccaac
aaggacgaacatgcccatatcggcaagggtctcatcggcgaggagggaatgcgcgcgttc
atcaaccacgatgccatcgtcgacaacgacgtcccgctcgtgctggagacgccgacggaa
aacggcaagagctacgagtggaacatcgagcgcgtccgcgagttccgcgccgacaagaat
taa
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