Haloferax mediterranei: HFX_1542
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Entry
HFX_1542 CDS
T02129
Symbol
tfb5
Name
(GenBank) transcription initiation factor TFB
KO
K03124
transcription initiation factor TFIIB
Organism
hme
Haloferax mediterranei
Pathway
hme03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HFX_1542 (tfb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hme03021
]
HFX_1542 (tfb5)
Transcription machinery [BR:
hme03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HFX_1542 (tfb5)
Prokaryotic type
Archaeal type
TFB
HFX_1542 (tfb5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_LysW
Ribosomal_S27e
Zn_ribbon_PaaD
A2L_zn_ribbon
Trm112p
Sigma70_r4
Zn_Ribbon_YjdM
Zn_ribbon_RRN7
Zn_ribbon_tTFIIB
Lar_restr_allev
Zn_ribbon_8
Cyclin_C
Zn_ribbon_IS1595
Zn_ribbon_Elf1
Cyclin_N
DUF5817
Zn_ribbon_Brz
Motif
Other DBs
NCBI-ProteinID:
AFK19249
UniProt:
I3R4T9
LinkDB
All DBs
Position
1456601..1457551
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AA seq
316 aa
AA seq
DB search
MERPSRQRQREEATAQEDEQVNCPECGSDQIVTDADQGELVCDDCGLVLDERQIDRGPEW
RAFNHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQER
IRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATSA
LYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASALE
LSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTEV
TIRNRYQEQIEAMGFR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtccgagccggcagcgtcagcgagaggaggcaacggcacaagaggacgagcaa
gtcaactgcccggagtgcgggtcggaccagatcgtcacagacgcagatcagggggagtta
gtgtgtgacgactgtggtctcgttctcgatgagcgacaaatcgaccgcgggccagagtgg
cgcgcgttcaatcactccgaacgccaatcgaagtcgcgcgtcggcgcaccaatcaccgag
acgatgcacgaccgcgggttgacgacgaccatcgactggaaggacaaagacgcctacggt
cggtcactctcgtccgagaagcgatcccagatgcaccgtcttcgaaaatggcaagagcga
attcgaaccaaagacgccggcgagcgtaacctgcagttcgcactcagcgaaatcgaccgc
atggcgtccgcgctcggcgtcccgcgttcggtacgcgaggtcgcatccgtcatttatcgt
cgcgcgctcaacgaggacctgattcgcgggcgctccatcgagggtgtcgccacatcggcg
ctctacgccgcctgccgtcaggaaggcatcccgcgctcgctcgacgaagtcgccgaagtg
tcgcgcgtcccgcagaaggaaatcggccgcacgtatcgctacatctcgcaagaactcggg
ctggaactcaagcccgtcgacccgaagcagttcgttccgcggttcgcctccgcactcgaa
ctctccgaggaagtgcaggcgaaggcgaccgaaatcatcgacgtttccgcagaacagggc
ctgctctccggcaagtcaccgaccggattcgccgccgccgctatctacgcggcgtcgctt
ctctgcaacgagaagaagacccagcgcgaagtcgcagatgtcgcgcaggtcaccgaggtc
accatccggaatcgctatcaggaacagattgaagcgatgggcttccgctaa
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integrated database retrieval system
