Haloferax mediterranei: HFX_2723
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Entry
HFX_2723 CDS
T02129
Symbol
rtcB
Name
(GenBank) rtcB-like protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hme
Haloferax mediterranei
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hme03016
]
HFX_2723 (rtcB)
Enzymes [BR:
hme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HFX_2723 (rtcB)
Transfer RNA biogenesis [BR:
hme03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HFX_2723 (rtcB)
Prokaryotic type
tRNA splicing ligases
HFX_2723 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFK20401
UniProt:
I3R841
LinkDB
All DBs
Position
complement(1936844..1938304)
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AA seq
486 aa
AA seq
DB search
MTTREFGDIELRRVREHVWEIPQEGEMNAPARVLASEALLEQIGQDKTLEQLRNATHLPG
ITNHAICMPDGHQGYGFPVGGVGATDATDGCISPGAVGYDINCGVRMMTTNLTYEDLKGK
EAELVDALFEAIPSGLGGGGVVTGDAETIDDILARGMEWALDAGYATEDDLAHCEDEGSR
DDARPEYVSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYREDVAESFGLEADQIVVLIHC
GSRGLGHQTCTDYLRRIEKEHADLLEELPDKELAAAPARSQLAEEYYGAMCAAINFAWVN
RQLVMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHTVDGEDRELYVHRKGATRA
FPAGRPELPPAYADVGQPVIIPGSMGAGSYILRGGESSLDLTFGSTAHGAGRLMSRTQAK
QEYWGETVQEELREQQKIFVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVVRTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactacacgcgagttcggcgatatcgaactgcgacgagttcgtgagcacgtctgggag
attccacaggagggcgagatgaacgcccccgcacgggtgctcgcctccgaagcgttgctc
gaacagatcggacaggacaagacgctcgagcagttgcggaacgcgacgcacctgccgggc
atcaccaaccacgctatctgcatgcccgacggccaccagggctacggcttccctgtcggc
ggcgtcggcgcgaccgacgccacagatggctgtatctcgccgggtgctgtcggctacgac
atcaactgcggcgtccgcatgatgacgacgaacctcacctacgaggacctcaagggcaag
gaagcggaactggtcgacgccctcttcgaggcgattccgtccggtctcggcggtggtggt
gtcgtcacgggcgacgcggagactatcgacgatatcctcgcccgtgggatggagtgggcg
ctcgacgcgggctatgcgaccgaagacgaccttgcacactgcgaagacgaggggtcccgt
gacgacgcacgacccgaatacgtctcgcagaaggccaaagaccgcggacgcaaccaaatc
ggaagcctcggctccgggaaccacttcctcgaagtgcagcgcgtcaccgacgtgtaccgc
gaggacgtggccgaatcgttcggtctcgaagccgaccaaatcgtcgtcctcattcactgt
ggctctcgcggtctcggccaccagacctgtacggactacctccggcgaatcgagaaggaa
cacgcggacctcctcgaagagctaccggacaaggaactcgccgccgcacccgcgaggtcg
caactcgccgaagagtactacggcgcgatgtgcgccgccatcaacttcgcgtgggtgaac
cggcaactcgtcatgcaccgcacgcgcgaggtgttcgccgacgtgttcgaccgcgactgg
cgcgacatggagatgcgactcctctacgacgtggcacacaacatcgccaagaaggaagtc
cacaccgttgacggcgaggaccgagaactctacgtccaccgcaagggcgcgaccagagcg
ttccccgcgggccgacccgaactcccaccggcgtacgccgacgtggggcagccggtcatc
atccccggcagcatgggcgcgggaagttacatcctccgcggcggcgagtcctcgctcgac
ctcacgttcgggtcgaccgcccacggcgcaggccgcttaatgagccgaacgcaagcgaaa
caggagtactggggcgagacggttcaggaagaactccgcgagcaacagaaaatcttcgtc
aaggcgcaatcgggcgcgacggtggccgaggaagcacccggcgtctacaaggacgttgac
gaagtcgttcgcgtctccgacgagttaggcatcggcgacaaggtggttcggacgttcccc
gtctgcaacatcaagggctaa
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