Haloferax mediterranei: HFX_2946
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Entry
HFX_2946 CDS
T02129
Symbol
endA
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hme
Haloferax mediterranei
Brite
KEGG Orthology (KO) [BR:
hme00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hme03016
]
HFX_2946 (endA)
Enzymes [BR:
hme01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
HFX_2946 (endA)
Transfer RNA biogenesis [BR:
hme03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
HFX_2946 (endA)
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AFK20610
UniProt:
I3R8Q0
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All DBs
Position
complement(2856731..2857750)
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AA seq
339 aa
AA seq
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MQGRLEDGIVHLPGDARQRFHDSRGYGRPTGGNDLEVAPVEAAHLLSRGDIDGVDGMGLR
ELLARTGTTLDFVVYKDLRDRGFYLSPTREGWPGVDDTGGADFLVYPRGKGPWDGDVEHR
VRVVGERESIPVSSLGDVVLAIVDEDGDLTYFDTEGFSPEGTATEDLPTGLDAELLSDRA
LVWDGVDRLYQNGFFGQRLYGRNADSGPLQLSLLEAAYLARQDSLAIDETDVVSRGHDVE
GDRFDRRLAVYAMLRELQTVPKSGFKFGSDFRVYTDFETVSDLSHSEFLVRVVAPEHTFV
PRDLSLDVRLAGGVRKRMVFALTSAKGEIDWLSVSRLTP
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacgcctcgaagacggcatcgtccatctcccgggcgatgcccgacagcgcttc
cacgattcgcgcgggtacgggagaccgaccggcggcaacgacctcgaagtcgcacccgtc
gaggccgcccacctgctctcgcgcggcgatatcgacggcgtggacgggatgggtctgcgc
gaactcctcgcgcgcaccggcaccacgctcgatttcgtcgtctacaaagacctccgcgac
cgcgggttctacctctctcccacccgcgagggatggccgggtgtcgacgacaccgggggc
gcggatttcctcgtctaccctcgcggaaagggaccgtgggatggcgatgtcgaacaccgg
gtgcgcgtcgtcggcgaacgcgagtccatcccggtctcgtcgctcggcgacgtggtactc
gctatcgtcgacgaggacggcgacctgacgtacttcgacactgagggcttctccccggag
gggacggccacagaagaccttccgaccggtctcgacgccgaactcctgtcggaccgcgca
ctcgtgtgggatggcgtggaccgcctctaccagaacggcttcttcgggcagcgcctctac
ggccgcaacgccgacagcggcccgcttcaactatcgctcctcgaagccgcgtatctcgcc
cggcaggattcgctcgccatcgacgagaccgacgtggtctcccgcggccacgacgtggag
ggcgaccgattcgaccgcagactcgcggtttacgcgatgctccgggagctgcagacggtc
cccaaaagcgggttcaagttcggctccgatttccgtgtctacaccgacttcgagacggtt
tcggacctctcgcactccgaattcctcgtgcgcgtggtcgcgcccgaacacacgtttgtt
ccacgggacctctcacttgacgttcgcctcgccggcggtgtccgcaagcgaatggttttt
gcgctaaccagcgccaagggagagatagactggctttcggtcagtcggctcacgccatga
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